Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00063
(768 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom... 123 3e-29
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 27 3.0
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo... 27 3.0
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 27 3.0
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho... 27 3.9
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac... 27 3.9
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 27 3.9
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 26 5.2
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 26 6.8
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 26 6.8
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 25 9.0
>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 585
Score = 123 bits (296), Expect = 3e-29
Identities = 56/84 (66%), Positives = 65/84 (77%)
Frame = +3
Query: 510 DLAISDYFRKQYSPGQAQLTLRYGMNPHQKPAQVFTTRDSLPITTLNGAPGFINLCDALN 689
D AI+DYFRKQY+ G QLTLRYG NPHQ PAQ F + LP L G+PG+INL DALN
Sbjct: 179 DAAITDYFRKQYAAGVDQLTLRYGANPHQSPAQAFMEQGPLPFKVLCGSPGYINLMDALN 238
Query: 690 AWQLVKELKEALNLPAAASFKHVS 761
+W LVKEL+E + +PAAASFKHVS
Sbjct: 239 SWPLVKELRENIGIPAAASFKHVS 262
Score = 101 bits (242), Expect = 1e-22
Identities = 49/81 (60%), Positives = 61/81 (75%)
Frame = +3
Query: 3 GLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAG 182
GLL LAK+L+ G++L+ SGGTA +R +G+ V DVS IT APE+LGGRVKTLHPAVH G
Sbjct: 12 GLLELAKALTSKGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVKTLHPAVHGG 71
Query: 183 ILARLSDSDQEDMKRQKYEMI 245
ILAR SD++D+ Q E I
Sbjct: 72 ILARDIPSDEKDLVEQSIEKI 92
Score = 61.3 bits (142), Expect = 1e-10
Identities = 26/35 (74%), Positives = 32/35 (91%)
Frame = +2
Query: 254 VCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 358
VCNLYPF +T++KP+VT+ +AVE IDIGGVTLLRA
Sbjct: 96 VCNLYPFRETIAKPNVTIPEAVEEIDIGGVTLLRA 130
Score = 37.9 bits (84), Expect = 0.002
Identities = 21/48 (43%), Positives = 26/48 (54%)
Frame = +1
Query: 361 AKNHDRVTVVCDPADYDVVVKEIKENKHHQTSLGTRQRLALKAFTHTS 504
AKNH RVT++ DPADY + +K Q R ALKAF T+
Sbjct: 132 AKNHARVTILSDPADYATFTDKFLSDKLTQDD---RNTYALKAFASTA 176
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 27.1 bits (57), Expect = 3.0
Identities = 9/39 (23%), Positives = 23/39 (58%)
Frame = -3
Query: 298 VRLRYRLDERVQVTDTTLIISYF*RFMSSWSESDNRAKI 182
+ ++ +L + ++V + L SY+ +F++SW D + +
Sbjct: 235 LEMKEKLHDLLEVEENNLNTSYYCKFLNSWFSGDYQQSV 273
>SPBC29A3.11c |||mitochondrial carboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 345 VTPPMSMFSTASATVTS-GLDTVWTNGYRLQTPR 247
V PP+S F +AS V G +W NGYR R
Sbjct: 155 VRPPLSSFQSASDIVRRYGFTALW-NGYRYHLTR 187
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 27.1 bits (57), Expect = 3.0
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Frame = +3
Query: 534 RKQYSPGQAQLTLRYGMNP------HQKPAQVFTTRDSLPITTLNGAPGFINLCDALNAW 695
R Y P Q LT +G+NP + ++ SL + ++ PGF + D + W
Sbjct: 118 RDVYPPTQKSLTGDFGVNPEPTVMINSSAVEIVENGISLQLNVID-TPGFGDFIDNTDCW 176
Query: 696 QLV 704
Q V
Sbjct: 177 QPV 179
>SPAC1F12.02c |p23fy||translationally controlled tumor protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 26.6 bits (56), Expect = 3.9
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Frame = -1
Query: 516 RGQVRSMSERLQG*S---LPCAQRRLMMFV---LFDFFDYNIVVGRVTDDGDPVVVLGCA 355
+G ++++ RLQ + +P ++ + FV L +F DY+ +G D VV++
Sbjct: 89 KGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPDAMVVLMNYR 148
Query: 354 RRRVTPPMSMF 322
+TP M F
Sbjct: 149 EDGITPYMIFF 159
>SPAC1D4.03c |aut12||autophagy associated protein
Aut12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 672 LCDALNAWQLVKELKEALNLPAAASFK 752
LCD LN ++LV L LP +SF+
Sbjct: 237 LCDQLNDYELVPTLNAISPLPLRSSFR 263
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 3.9
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 567 TLRYGMNPHQKPAQVFTTRDSLPITT----LNGAPGFINLCDALNAWQLVKE 710
T+RY + PH KP T R + + L A NL D +A+QLV E
Sbjct: 944 TIRYAVYPHSKPLDSSTVRAAHKFNSNFRLLTRASDTANL-DIFDAFQLVGE 994
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 478 ALKAFTHTSDLTSPYRTTSASNTRPD 555
+L+ FT S L S Y+TT SNT D
Sbjct: 498 SLRCFTKRSHLRSVYQTTLLSNTDLD 523
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +3
Query: 663 FINLCDALNA--WQLVKELKEALNLPAAA 743
F+N D + A W++++++ L +PAAA
Sbjct: 203 FVNKMDRMGADPWKVIQQINTKLKIPAAA 231
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 25.8 bits (54), Expect = 6.8
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = -1
Query: 402 GRVTDDGDPVVVLGCARRRVTPPMSMFSTASATVTSGLDTVWTNGYRLQTPRLSSRTSDV 223
G+ T G V + RRV P +S+ ++ TV +DT ++ +L ++ +DV
Sbjct: 461 GQSTKPGADPVSVEEELRRVIPMISLLRSSGITVPISIDTYYSKVAKLAIEAGANIINDV 520
Query: 222 SCLPGQSPIIEL 187
+ G ++ L
Sbjct: 521 TGGMGDEKMLPL 532
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 92 PHSSRCVGHHESTGDARRSGENFTSSGT 175
PHS GH +ST + S N S GT
Sbjct: 247 PHSHSPAGHQQSTPKSTLSKTNENSEGT 274
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,412
Number of Sequences: 5004
Number of extensions: 54897
Number of successful extensions: 182
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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