Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00063
         (768 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621...    73   3e-13
08_01_0621 - 5426210-5427787                                           31   1.3  
04_01_0102 + 1060539-1060657,1060752-1060904,1061478-1061728,106...    31   1.3  
04_01_0101 + 1041755-1041864,1041950-1042102,1042174-1042424,104...    29   3.1  
03_06_0619 - 35136435-35136728,35137155-35137358,35137476-351376...    29   4.1  
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731...    29   5.4  
04_01_0408 - 5393354-5393659,5393974-5394219,5394442-5394583,539...    29   5.4  
02_05_0694 - 30984408-30985160,30985357-30985487,30985586-30985853     28   7.1  
03_01_0112 + 902459-902770,903275-903280                               28   9.4  

>08_01_0703 +
           6212409-6212456,6212661-6212742,6214031-6214106,
           6214498-6214594,6214760-6214862,6214973-6215103,
           6215285-6215462,6215528-6215715,6215945-6216154,
           6216231-6216578,6216660-6216786,6217304-6217455
          Length = 579

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 35/63 (55%), Positives = 42/63 (66%)
 Frame = +3

Query: 6   LLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGI 185
           L  L   L   G  +I++GGTA++L  AG+ V  V  IT  PEML GRVKTLHP+VH GI
Sbjct: 58  LAYLGNGLQALGFSIISTGGTASSLEAAGVNVTKVEQITNFPEMLDGRVKTLHPSVHGGI 117

Query: 186 LAR 194
           LAR
Sbjct: 118 LAR 120



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 18/35 (51%), Positives = 24/35 (68%)
 Frame = +2

Query: 254 VCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 358
           V NLYPF   V+   ++  D +ENIDIGG T++RA
Sbjct: 142 VVNLYPFYNKVTSGVISFEDGIENIDIGGPTMIRA 176



 Score = 31.1 bits (67), Expect = 1.0
 Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 11/92 (11%)
 Frame = +3

Query: 519 ISDYFRKQYS-PGQAQLTLRYGMNPHQKPAQVFTTRDSLPITTLNGAP----------GF 665
           + D F   ++ P   + TLRYG NPHQK A  F    SL +    G             +
Sbjct: 248 VGDVFPPNFTVPLSLKSTLRYGENPHQKAA--FYGDKSLSVVNAGGIATAIQHHGKEMSY 305

Query: 666 INLCDALNAWQLVKELKEALNLPAAASFKHVS 761
            N  DA  AW  V E +     P     KH +
Sbjct: 306 NNYLDADAAWNCVSEFES----PTCVVVKHTN 333



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +1

Query: 361 AKNHDRVTVVCDPADYDVVVKEIKENKHHQTSLGTRQRLALKAFTHTSDLTS 516
           AKNH  V V+ D  DY  +++ ++  +  Q     R+ LA KAF H +   S
Sbjct: 178 AKNHKDVLVMVDHEDYPALLEYLQGKQDDQQ---FRKMLAWKAFQHVASYDS 226


>08_01_0621 - 5426210-5427787
          Length = 525

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 417 YNIVVGRVTDDGDPVVVLGCARRRVTPP 334
           Y++  GR+ DDGD  + + C RR V+ P
Sbjct: 140 YSLAEGRMCDDGDVRLPMACRRRYVSSP 167


>04_01_0102 +
           1060539-1060657,1060752-1060904,1061478-1061728,
           1061959-1062141,1062248-1062395,1062679-1062850,
           1062971-1063105,1063210-1063356
          Length = 435

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 2/108 (1%)
 Frame = -1

Query: 516 RGQVRSMSERLQG*SLPCAQRRL--MMFVLFDFFDYNIVVGRVTDDGDPVVVLGCARRRV 343
           RG   +  ER      P  Q  L  + F + D FD   + GRVT  G+P      A    
Sbjct: 8   RGDYGAFMERFVLPPPPSQQLPLHGLTFAIKDIFD---IAGRVTGFGNPDWARTHAPAAA 64

Query: 342 TPPMSMFSTASATVTSGLDTVWTNGYRLQTPRLSSRTSDVSCLPGQSP 199
           T P+ + + A+   + G   +    Y +        T    C PG+ P
Sbjct: 65  TSPVVLAALAAGATSLGTTIMDEMAYSINGENTHYGTPTNPCAPGRVP 112


>04_01_0101 +
           1041755-1041864,1041950-1042102,1042174-1042424,
           1042878-1043060,1043163-1043310,1043787-1043958,
           1057226-1057366,1057478-1057624
          Length = 434

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 21/83 (25%), Positives = 33/83 (39%)
 Frame = -1

Query: 447 MMFVLFDFFDYNIVVGRVTDDGDPVVVLGCARRRVTPPMSMFSTASATVTSGLDTVWTNG 268
           + F + D FD   + GRVT  G+P      A    T P+ + + A+   + G   +    
Sbjct: 30  LTFAIKDIFD---IAGRVTGFGNPDWARTHAPAAATSPVVLAALAAGATSLGTTIMDEMA 86

Query: 267 YRLQTPRLSSRTSDVSCLPGQSP 199
           Y +        T    C PG+ P
Sbjct: 87  YSIYGENAHYGTPANPCAPGRVP 109


>03_06_0619 -
           35136435-35136728,35137155-35137358,35137476-35137646,
           35137902-35138050,35138380-35138527,35138614-35138682,
           35138767-35139027,35139223-35139417,35139772-35139888,
           35140026-35140961
          Length = 847

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 692 GVQRVAQVDKSRRTVQCRDRQAVSGRENLGRFLMWVHT 579
           G + VA  D   +T  C D   +   + L RF+++VH+
Sbjct: 660 GKREVAAGDSMSQTSLCNDNSTLRSAQKLRRFMIYVHS 697


>12_01_0798 +
           7314885-7314953,7315324-7315387,7315489-7315677,
           7316430-7316625,7316727-7316953,7317177-7318134,
           7320104-7321307,7321517-7321876,7321965-7323195,
           7323334-7323599,7323738-7326335
          Length = 2453

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = +3

Query: 552 GQAQLTLRYGMNPHQKPAQVFTTRDSLPITTLNGA----PGFINLCDALNAWQLVKELKE 719
           G     LR G + +  P  V+T  D +   T NGA     G + + D LN   L+KE  E
Sbjct: 87  GNRITVLRKG-DGYASPCGVYTNNDRMAFFT-NGAWLEAQGILGVVDDLNTLHLIKENGE 144

Query: 720 AL 725
           AL
Sbjct: 145 AL 146


>04_01_0408 -
           5393354-5393659,5393974-5394219,5394442-5394583,
           5394981-5395076,5395153-5395265,5395345-5395559,
           5395645-5395742,5395815-5395935,5396020-5396240,
           5396625-5396805,5396906-5397188,5397346-5397395,
           5398565-5398805
          Length = 770

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 23/57 (40%), Positives = 26/57 (45%)
 Frame = +2

Query: 47  VDCQWRYRHGASERRPHSSRCVGHHESTGDARRSGENFTSSGTRWYLSSIIGL*PGR 217
           +DC  R RH    RRPH S        TG  RR      S+GTR  +SS  G   GR
Sbjct: 37  LDC--RRRHNGGMRRPHVSFACSAELDTG--RR---QLPSTGTRAVMSSCPGYVEGR 86


>02_05_0694 - 30984408-30985160,30985357-30985487,30985586-30985853
          Length = 383

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 525 DYFRKQYSPGQAQLTLRYGMN-PHQKPAQVFT 617
           D    QY PG + L L YG++ PH +P   F+
Sbjct: 49  DVGNNQYLPGNSPLQLPYGIDFPHSRPTGRFS 80


>03_01_0112 + 902459-902770,903275-903280
          Length = 105

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 146 TSEHLRCSRDVRHILNCEAGVPK 78
           T+  LR  RD RH+  CE+GVPK
Sbjct: 58  TATRLRL-RDGRHLAYCESGVPK 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,259,588
Number of Sequences: 37544
Number of extensions: 416195
Number of successful extensions: 1497
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1497
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)