Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00063
         (768 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)             134   7e-32
SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)                      58   6e-09
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_25993| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)                30   2.4  
SB_28107| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      29   5.5  
SB_36418| Best HMM Match : Ion_trans (HMM E-Value=3.5e-28)             28   7.2  
SB_22848| Best HMM Match : RVT_1 (HMM E-Value=5.1e-15)                 28   7.2  
SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score =  134 bits (324), Expect = 7e-32
 Identities = 58/84 (69%), Positives = 69/84 (82%)
 Frame = +3

Query: 510 DLAISDYFRKQYSPGQAQLTLRYGMNPHQKPAQVFTTRDSLPITTLNGAPGFINLCDALN 689
           D+AISDYFRK+YS   + + LRYGMNPHQKPAQ+ T    LP+  LNGAPGFINLCDA N
Sbjct: 215 DMAISDYFRKEYSENVSHIPLRYGMNPHQKPAQLMTMEPELPVKVLNGAPGFINLCDAFN 274

Query: 690 AWQLVKELKEALNLPAAASFKHVS 761
           +WQLV+EL ++L +PAAASFKHVS
Sbjct: 275 SWQLVRELHQSLGIPAAASFKHVS 298



 Score =  115 bits (276), Expect = 5e-26
 Identities = 53/81 (65%), Positives = 66/81 (81%)
 Frame = +3

Query: 3   GLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAG 182
           GL+  AK L + G +L+ASGGTA A+RNAG+ V+DVS+IT APEMLGGRVKTLHPAVH G
Sbjct: 45  GLVEFAKQLHDLGFRLVASGGTANAIRNAGIPVRDVSEITGAPEMLGGRVKTLHPAVHGG 104

Query: 183 ILARLSDSDQEDMKRQKYEMI 245
           ILAR+S+ D+ DM +Q +E I
Sbjct: 105 ILARVSEGDKADMAKQGFEYI 125



 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 29/48 (60%), Positives = 37/48 (77%)
 Frame = +1

Query: 361 AKNHDRVTVVCDPADYDVVVKEIKENKHHQTSLGTRQRLALKAFTHTS 504
           AKNH+RVTVVCDP DY+ V+ E+ EN+   T   TR+ LALKAF+HT+
Sbjct: 165 AKNHERVTVVCDPEDYNKVLSEMTENETCDTLPDTRKTLALKAFSHTA 212



 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 27/35 (77%), Positives = 30/35 (85%)
 Frame = +2

Query: 254 VCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 358
           VCNLYPFV TV+K  V V++AVE IDIGGVTLLRA
Sbjct: 129 VCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRA 163


>SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)
          Length = 79

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 27/35 (77%), Positives = 30/35 (85%)
 Frame = +2

Query: 254 VCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 358
           VCNLYPFV TV+K  V V++AVE IDIGGVTLLRA
Sbjct: 26  VCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRA 60



 Score = 37.1 bits (82), Expect = 0.016
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = +1

Query: 361 AKNHDRVTVVCDPADYD 411
           AKNH+RVTVVCDP DY+
Sbjct: 62  AKNHERVTVVCDPEDYN 78


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -1

Query: 336 PMSMFSTASATVTSGLDTVWTNGYRLQTPRLSSRTSDVSCLPGQSP 199
           P   F + + T+T+G+   +TNG  +     ++R      + GQSP
Sbjct: 399 PQQQFPSGNTTMTNGVQQSFTNGPSVSQSGYNNRPPQFPTIQGQSP 444


>SB_25993| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -2

Query: 710 LLDELPGVQRVAQVDKSRRTVQCRDRQAVSGRENLGRF 597
           LLDEL  VQR A + +S RT    D  A + R N+ ++
Sbjct: 57  LLDELDKVQRRASLWRSDRTSHSEDYNAPNARTNIFKY 94


>SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)
          Length = 1706

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +1

Query: 373  DRVTVVCDPADYDVVVKEIKE-NKHHQTSLGTR--QRLALKAFTHTSDLT 513
            D +   CDPA+ + ++  I+E N+HHQ  L     + LA K    T  LT
Sbjct: 1447 DGILRTCDPAELEALLMLIEEQNEHHQKVLWVMNIRSLAYKKLASTRPLT 1496


>SB_28107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1037

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -1

Query: 219 CLPGQSPIIELR---YQRVPLDVKFSPD 145
           C+P + PI E R   Y R+P  ++F PD
Sbjct: 687 CIPAEKPIEESRRKNYPRLPATIRFDPD 714


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/64 (28%), Positives = 26/64 (40%)
 Frame = +2

Query: 221  ETSEVRDDKRGVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRAQPRTTTGSPSSVTR 400
            +TS +      +C+   +V     P V      +   I  VT     PRTT   P+S + 
Sbjct: 1435 DTSRIMLKLHFICSFVKYVAQFGAPPVQPLSGPQRASISRVT-----PRTTPDKPTSSST 1489

Query: 401  PTTM 412
            P TM
Sbjct: 1490 PVTM 1493


>SB_36418| Best HMM Match : Ion_trans (HMM E-Value=3.5e-28)
          Length = 466

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = -1

Query: 612 KPGPVSDVGSYRILRLVGLVR 550
           +PG +SD+ S+ +LRLV LVR
Sbjct: 284 RPGKLSDIVSFPLLRLVRLVR 304


>SB_22848| Best HMM Match : RVT_1 (HMM E-Value=5.1e-15)
          Length = 630

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 448 QTSLGTRQRLALKAFTHTSDLTSPYRTTSASNTRPDKPN 564
           Q  LG  Q LA K     SD+T P R  + S+ +P  PN
Sbjct: 196 QRLLGLAQYLA-KFLPQLSDITKPLRDLTQSDVQPSIPN 233


>SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 737

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 323 NIDIGGVTLLRAQPRTTTGSPSSVTRPTTML*SKKSKRTNIIRRL 457
           N D+      +  P      PSS TR T    +KK  R+N+++++
Sbjct: 377 NWDLNPTDHTQFVPSKAAAKPSSPTRTTQQYHTKKGHRSNVVQKV 421


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,813,182
Number of Sequences: 59808
Number of extensions: 475003
Number of successful extensions: 1638
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1634
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)