Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00063
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   1.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   7.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   7.2  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   9.5  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 6   LLSLAKSLSECGLQLIASGGTATALRNA 89
           LLS  +S+SEC L   +S  +  + RN+
Sbjct: 166 LLSKRRSVSECSLGTASSTSSTASSRNS 193


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 579 RILRLVGLVRASIACGSS 526
           RILRL  +  ASIA G+S
Sbjct: 223 RILRLDAIDEASIAVGAS 240


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 126 APEMLGGRVKTLHPAV 173
           AP MLGGR  T +  V
Sbjct: 340 APHMLGGRTDTTYRVV 355


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 267 YRLQTPRLSSRTSDVSCLPGQSP 199
           YRL  P +S  TS     PG++P
Sbjct: 494 YRLNKPLMSLITSSEVRQPGKAP 516


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,435
Number of Sequences: 438
Number of extensions: 3650
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)