Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00062
(804 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 71 1e-12
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 8e-12
SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37) 65 5e-11
SB_15708| Best HMM Match : UQ_con (HMM E-Value=0) 60 2e-09
SB_33407| Best HMM Match : UQ_con (HMM E-Value=0) 48 9e-06
SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30) 47 2e-05
SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18) 46 5e-05
SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15) 41 0.001
SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06) 39 0.004
SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05) 38 0.013
SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07) 37 0.022
SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39) 36 0.051
SB_3717| Best HMM Match : UQ_con (HMM E-Value=0.00017) 34 0.12
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.63
SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_33052| Best HMM Match : Ribosomal_S3_C (HMM E-Value=4.2) 29 3.3
SB_56714| Best HMM Match : 7tm_3 (HMM E-Value=1.6e-18) 29 5.8
SB_8042| Best HMM Match : DUF803 (HMM E-Value=0) 29 5.8
SB_48646| Best HMM Match : Sulfotransfer_1 (HMM E-Value=8.5) 28 7.7
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 70.9 bits (166), Expect = 1e-12
Identities = 36/94 (38%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Frame = +1
Query: 262 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSL 441
N W+ AI G GT + GG +K M F DYP SPP +F ++HPN+Y SG VC+S+
Sbjct: 1153 NTFEWDVAIFGPPGTLYAGGYFKAHMSFPHDYPYSPPTFRFLTKMWHPNIYESGDVCISI 1212
Query: 442 LDEEKD-----------WRPAITIKQILLGIQDL 510
L D W P ++ ILL + L
Sbjct: 1213 LHPPVDDPQSGELPSERWNPTQNVRTILLSVISL 1246
>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 68.1 bits (159), Expect = 8e-12
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 11/91 (12%)
Frame = +1
Query: 262 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSL 441
+L WE + G GT +E G +K M+F +YP PP F ++HPNV+ +G VC+S+
Sbjct: 361 DLYKWEIMVVGPPGTYYEEGYFKASMVFPKEYPQRPPTLTFISDIWHPNVHKNGEVCISI 420
Query: 442 LDE-----------EKDWRPAITIKQILLGI 501
L E ++ WRP T++ I+L +
Sbjct: 421 LHEPGEDKYGYEKADERWRPIHTVETIMLSV 451
>SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)
Length = 190
Score = 65.3 bits (152), Expect = 5e-11
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Frame = +1
Query: 292 GKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSLL--DEEKDWR 465
G +GTP+ G++KL + + YP PPK +F P++HPN+ SG +CL L + W+
Sbjct: 4 GAEGTPYHKGIFKLDIQIPERYPFEPPKVRFVTPIYHPNIDSSGRICLDTLKMPPKGMWK 63
Query: 466 PAITIKQIL 492
PA+ I +L
Sbjct: 64 PALNISSVL 72
>SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 145
Score = 60.1 bits (139), Expect = 2e-09
Identities = 24/77 (31%), Positives = 45/77 (58%)
Frame = +1
Query: 262 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSL 441
N++ W+ I + P+ G +++ + F +YP PPK F+ ++HPN+ G VCL +
Sbjct: 22 NILYWQGLIVPEM-PPYNKGAFRIEICFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPI 80
Query: 442 LDEEKDWRPAITIKQIL 492
+ E +W+PA +Q++
Sbjct: 81 ISPE-NWKPATKTEQVI 96
>SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 226
Score = 48.0 bits (109), Expect = 9e-06
Identities = 30/83 (36%), Positives = 41/83 (49%)
Frame = +1
Query: 262 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSL 441
+L W I G G+ +EGG++ L + F DYP PPK G VCL +
Sbjct: 123 DLYEWYSTILGPPGSVYEGGVFFLDIHFPSDYPFKPPK---------------GMVCLDI 167
Query: 442 LDEEKDWRPAITIKQILLGIQDL 510
L + W PA+TI ++LL I L
Sbjct: 168 LKD--SWSPALTISKVLLSICSL 188
>SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30)
Length = 204
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +1
Query: 358 PSSPPKCKFEPPLFHPNVYPSGTVCLSLL--DEEKDWRPAITIKQIL 492
P PPK +F P++HPN+ SG +CL L + W+PA+ I +L
Sbjct: 40 PFEPPKVRFVTPIYHPNIDSSGRICLDTLKMPPKGMWKPALNISSVL 86
>SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18)
Length = 215
Score = 45.6 bits (103), Expect = 5e-05
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = +1
Query: 262 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLS 438
N+ +E I G + GG +K + +DYP++PP + ++HPN+ G+VCLS
Sbjct: 35 NMEEFELQITPTDGA-YRGGQFKFS-VKTEDYPNTPPVPRCVNNIYHPNMDLDDGSVCLS 92
Query: 439 LLDEEKDWRPAITIKQILLGI 501
LLD DW + ++ ++ G+
Sbjct: 93 LLD---DWNESNDLEDLVQGL 110
>SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 44.4 bits (100), Expect = 1e-04
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Frame = +1
Query: 232 EAYEESRCSLNLMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNV 411
E Y NL W + G T + GG Y R+I +YP PP P +
Sbjct: 27 ELYHAQPLEDNLFEWHFTVRGPPDTEFAGGRYHGRIILPPEYPMKPPSIMLLTP--NGRF 84
Query: 412 YPSGTVCLSL-LDEEKDWRPAITIKQILLGI 501
+CLS+ + W+P+ +I+ +L+ I
Sbjct: 85 EIGKKICLSMSAHHPETWQPSWSIRTVLMAI 115
>SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/43 (44%), Positives = 30/43 (69%)
Frame = +1
Query: 382 FEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDL 510
F +FHPNV +G +C++ L +KDW+P + IKQ+LL ++ L
Sbjct: 147 FLTKIFHPNVAKNGEICVNTL--KKDWKPDLGIKQVLLTVKCL 187
>SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +1
Query: 286 IPGKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPP-----LFHPNVYPSGTVCLSLLDE 450
I G TP+EGG + + DYP PP+ K F+PN+Y +G VCLS++ +
Sbjct: 17 ITGPFDTPYEGGFFYFLIRCPPDYPIRPPRVKLMTTGSGQVRFNPNLYRNGKVCLSIIGD 76
>SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15)
Length = 243
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/80 (28%), Positives = 41/80 (51%)
Frame = +1
Query: 262 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSL 441
N+ +E I G + GG +K + DYP+ P + ++HPN+ VC+SL
Sbjct: 35 NMEEFELQITPTDGA-YRGGQFKFS-VRTTDYPNVAPSINCKTKIYHPNMDGYDGVCMSL 92
Query: 442 LDEEKDWRPAITIKQILLGI 501
LD DW+ + ++ ++ G+
Sbjct: 93 LD---DWQASNDLEDLVQGL 109
>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
Length = 739
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +1
Query: 286 IPGKKGTPWEGGLYKLRMIFKDDYPSSPPKCKFEPPL---FHPNVYPSGTVCLS 438
I G GTP++ GL+ ++ +YP +PP + +PN+Y G VC++
Sbjct: 640 IEGPAGTPYDHGLFAFDILLPANYPDAPPSFHYLSMCNGRLNPNLYEDGKVCIT 693
>SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)
Length = 200
Score = 37.5 bits (83), Expect = 0.013
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 262 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPPK 375
+L W I G G+ +EGG++ L + F DYP PPK
Sbjct: 163 DLYEWYSTILGPPGSVYEGGVFFLDIHFPSDYPFKPPK 200
>SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07)
Length = 181
Score = 36.7 bits (81), Expect = 0.022
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 265 LMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPPK 375
L W I G G+ +EGG++ L + F DYP PPK
Sbjct: 51 LYEWYSTILGPPGSVYEGGVFFLDIHFPTDYPFKPPK 87
>SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)
Length = 841
Score = 35.5 bits (78), Expect = 0.051
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 286 IPGKKGTPWEGGLYKLRMIFKDDYPSSPPK 375
I G TP+EGG Y L ++ + YP +PPK
Sbjct: 693 IRGPPETPFEGGTYNLDIVIPETYPFNPPK 722
>SB_3717| Best HMM Match : UQ_con (HMM E-Value=0.00017)
Length = 123
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 262 NLMTWECAIPGKKGTPWEGGLYKLRMIFKDDYPSSPP 372
NL W + G T + GG Y R+I +YP PP
Sbjct: 2 NLFEWHFTVRGPPDTEFAGGRYHGRIILPPEYPMKPP 38
>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3066
Score = 33.5 bits (73), Expect = 0.21
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = -2
Query: 260 NEHLDSS*ASRQNQRDGPYAKLSVLQLNVHLLSLTFSTKITRFMSRAS 117
+ L S S++N+ D P L++ LN HL ++ ++T+FM + +
Sbjct: 2869 SSRLRSPSGSKRNKEDSPNVPLTLSDLNNHLNTINLQVEVTKFMHKCA 2916
>SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 710
Score = 32.3 bits (70), Expect = 0.47
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 292 GKKGTPWEGGLYKLRMIFKDDYPSSPP 372
G GTP+EGG++K+R+ + YP P
Sbjct: 56 GPVGTPYEGGVWKVRVDLPEKYPFKSP 82
>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 31.9 bits (69), Expect = 0.63
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 331 LRMIFKDDYPSSPPKCKFEPPLFHPN-VYPSGTVCLSLLDEEKDWRPAITIKQILL 495
L + F +++P +PP + P V G +C+ LL K W A T++ ++L
Sbjct: 793 LNITFPENFPFAPPFMRVLAPRIEGGFVLDGGAICMELL-TPKGWSSAYTVEAVVL 847
>SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 313 PMESPFYQVSHIPKSLNSMNIWILHRPRDKTKGMVLTP 200
P+ES FYQ SH K ++ + H+ R + G + P
Sbjct: 235 PLESTFYQCSHCSKIYDNSSSLARHKARHEMTGKSVNP 272
>SB_33052| Best HMM Match : Ribosomal_S3_C (HMM E-Value=4.2)
Length = 260
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 678 RQWLSSLTLHCPILIFTQQQPL 613
R+WL S+TL+CP+L T + L
Sbjct: 178 REWLHSITLNCPLLNLTASKNL 199
>SB_56714| Best HMM Match : 7tm_3 (HMM E-Value=1.6e-18)
Length = 484
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 370 PKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGI 501
P C P +PNV + TVC+ L E DW ++ + L I
Sbjct: 165 PNCTMCPIKQYPNV--NRTVCIDLPLENLDWTSLVSASMLALAI 206
>SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)
Length = 603
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 296 KRGLHGKVGCI-NYV*SSKMIIHQVLQNA 379
K+ LHGKVGCI + + S+ ++IH + A
Sbjct: 350 KQNLHGKVGCILSIIGSTVLVIHAPQEEA 378
>SB_48646| Best HMM Match : Sulfotransfer_1 (HMM E-Value=8.5)
Length = 674
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 352 DYPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAI 474
D + P C F +F +P V LS+ D+E+ WR ++
Sbjct: 60 DATTDAPACFFYKEIFR--AFPYAKVILSVRDDEESWRRSL 98
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,223,598
Number of Sequences: 59808
Number of extensions: 522778
Number of successful extensions: 1233
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -