Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00061
         (367 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IVB5 Cluster: LIX1-like protein; n=31; Eumetazoa|Rep:...    61   5e-09
UniRef50_Q4RUT4 Cluster: Chromosome 12 SCAF14993, whole genome s...    50   2e-05
UniRef50_Q8N485 Cluster: Protein limb expression 1 homolog; n=23...    48   4e-05

>UniRef50_Q8IVB5 Cluster: LIX1-like protein; n=31; Eumetazoa|Rep:
           LIX1-like protein - Homo sapiens (Human)
          Length = 337

 Score = 61.3 bits (142), Expect = 5e-09
 Identities = 24/26 (92%), Positives = 25/26 (96%)
 Frame = +2

Query: 257 PPYVCYVTLPGGACFGSFQNCPTKAE 334
           PPYVCYVTLPGG+CFGSFQ CPTKAE
Sbjct: 134 PPYVCYVTLPGGSCFGSFQFCPTKAE 159



 Score = 34.7 bits (76), Expect = 0.53
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +3

Query: 159 MEALQEFWQVKXXXXXXXXXXXLVIYESVPAAIRP 263
           +EALQEFWQ+K           LV+YE VP+   P
Sbjct: 101 VEALQEFWQMKQSRGADLKNGALVVYEMVPSNSPP 135


>UniRef50_Q4RUT4 Cluster: Chromosome 12 SCAF14993, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 12 SCAF14993, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 666

 Score = 49.6 bits (113), Expect = 2e-05
 Identities = 21/32 (65%), Positives = 27/32 (84%), Gaps = 2/32 (6%)
 Frame = +2

Query: 257 PPYVCYVTLPGGACFGSFQNCPTKAE--QDAA 346
           PPYVCYVTLPGG+CFG+++ C  +AE  +DAA
Sbjct: 51  PPYVCYVTLPGGSCFGNYKVCLFQAEARRDAA 82


>UniRef50_Q8N485 Cluster: Protein limb expression 1 homolog; n=23;
           Coelomata|Rep: Protein limb expression 1 homolog - Homo
           sapiens (Human)
          Length = 282

 Score = 48.4 bits (110), Expect = 4e-05
 Identities = 21/32 (65%), Positives = 27/32 (84%), Gaps = 2/32 (6%)
 Frame = +2

Query: 257 PPYVCYVTLPGGACFGSFQNCPTKAE--QDAA 346
           PP+V YVTLPGG+CFG+FQ C ++AE  +DAA
Sbjct: 64  PPFVSYVTLPGGSCFGNFQCCLSRAEARRDAA 95


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 283,930,551
Number of Sequences: 1657284
Number of extensions: 3822975
Number of successful extensions: 9822
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9821
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 13220924981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)