Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00061
         (367 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22788| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   4e-10
SB_42227| Best HMM Match : SDA1 (HMM E-Value=0.66)                     29   1.2  
SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_50171| Best HMM Match : 7tm_1 (HMM E-Value=2.8026e-45)              27   6.2  
SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_33931| Best HMM Match : NADH5_C (HMM E-Value=0.67)                  26   8.1  
SB_15014| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  
SB_20450| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  

>SB_22788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 60.5 bits (140), Expect = 4e-10
 Identities = 24/33 (72%), Positives = 27/33 (81%)
 Frame = +2

Query: 257 PPYVCYVTLPGGACFGSFQNCPTKAEQDAAPLK 355
           PPYVC+VTLPGG+CFGSFQ CPTKAE   +  K
Sbjct: 203 PPYVCFVTLPGGSCFGSFQPCPTKAEAKRSAAK 235


>SB_42227| Best HMM Match : SDA1 (HMM E-Value=0.66)
          Length = 806

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -3

Query: 215 RRAPASCRLHLPKLLEGFHTFTVER 141
           R+AP   R HLP LL  FH  TV R
Sbjct: 13  RKAPCKLRQHLPALLANFH-LTVNR 36


>SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1088

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 233 LRVCAGCHPPY-VCYVTLPGGACFGS 307
           LR+    +P Y VCY T P G  FGS
Sbjct: 831 LRIDRNWYPHYGVCYFTTPLGVLFGS 856


>SB_50171| Best HMM Match : 7tm_1 (HMM E-Value=2.8026e-45)
          Length = 335

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 233 LRVCAGCHPPY-VCYVTLPGGACFGS 307
           LR+    +P Y VCY T P G  FGS
Sbjct: 78  LRIDRNWYPHYGVCYFTTPLGVLFGS 103


>SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 7   PVQPHAPLWR*GSGAAMVYPEPSRWG 84
           P  P+ P W   +G +  Y +PS+WG
Sbjct: 66  PRYPYMPTW---TGYSTAYQQPSKWG 88


>SB_33931| Best HMM Match : NADH5_C (HMM E-Value=0.67)
          Length = 407

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 206 PASCRLHLPKLLEGFH 159
           PA CR H  K LEGF+
Sbjct: 363 PAGCRSHSKKCLEGFY 378


>SB_15014| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 257 PPYVCYVTLPGGACF 301
           PP  CYV +P G C+
Sbjct: 62  PPGTCYVLMPPGTCY 76


>SB_20450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 556

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 236 VDDEGAARRAPASCRLHLPKLLEGFHTFTVERT 138
           V++E A  +AP   R HLP LL  F   T  RT
Sbjct: 32  VNNELACFKAPCKLRQHLPALLANFR-LTDNRT 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,840,858
Number of Sequences: 59808
Number of extensions: 117565
Number of successful extensions: 286
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 582596255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)