Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00061
         (367 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC035727-1|AAH35727.1|  337|Homo sapiens Lix1 homolog (mouse)-li...    61   9e-10
BC036467-1|AAH36467.1|  282|Homo sapiens Lix1 homolog (mouse) pr...    48   7e-06
AK098400-1|BAC05298.1|  282|Homo sapiens protein ( Homo sapiens ...    48   7e-06

>BC035727-1|AAH35727.1|  337|Homo sapiens Lix1 homolog (mouse)-like
           protein.
          Length = 337

 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 24/26 (92%), Positives = 25/26 (96%)
 Frame = +2

Query: 257 PPYVCYVTLPGGACFGSFQNCPTKAE 334
           PPYVCYVTLPGG+CFGSFQ CPTKAE
Sbjct: 134 PPYVCYVTLPGGSCFGSFQFCPTKAE 159



 Score = 34.7 bits (76), Expect = 0.092
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +3

Query: 159 MEALQEFWQVKXXXXXXXXXXXLVIYESVPAAIRP 263
           +EALQEFWQ+K           LV+YE VP+   P
Sbjct: 101 VEALQEFWQMKQSRGADLKNGALVVYEMVPSNSPP 135


>BC036467-1|AAH36467.1|  282|Homo sapiens Lix1 homolog (mouse)
           protein.
          Length = 282

 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 21/32 (65%), Positives = 27/32 (84%), Gaps = 2/32 (6%)
 Frame = +2

Query: 257 PPYVCYVTLPGGACFGSFQNCPTKAE--QDAA 346
           PP+V YVTLPGG+CFG+FQ C ++AE  +DAA
Sbjct: 64  PPFVSYVTLPGGSCFGNFQCCLSRAEARRDAA 95



 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 147 DCERMEALQEFWQVKXXXXXXXXXXXLVIYESVPA 251
           D   +  LQEFW+ K           +V+YES+PA
Sbjct: 27  DLNVVSMLQEFWESKQQQKAAFPSEGVVVYESLPA 61


>AK098400-1|BAC05298.1|  282|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25534 fis, clone CBR08513. ).
          Length = 282

 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 21/32 (65%), Positives = 27/32 (84%), Gaps = 2/32 (6%)
 Frame = +2

Query: 257 PPYVCYVTLPGGACFGSFQNCPTKAE--QDAA 346
           PP+V YVTLPGG+CFG+FQ C ++AE  +DAA
Sbjct: 64  PPFVSYVTLPGGSCFGNFQCCLSRAEARRDAA 95



 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 147 DCERMEALQEFWQVKXXXXXXXXXXXLVIYESVPA 251
           D   +  LQEFW+ K           +V+YES+PA
Sbjct: 27  DLNVVSMLQEFWESKQQQKAAFPSEGVVVYESLPA 61


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,532,269
Number of Sequences: 237096
Number of extensions: 592490
Number of successful extensions: 1661
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1661
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2306171440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)