Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00061
         (367 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23100.1 68415.m02756 DC1 domain-containing protein contains ...    26   6.7  
At1g30850.1 68414.m03773 hypothetical protein                          26   8.8  

>At2g23100.1 68415.m02756 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 711

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 254 HPPYVCYVTLPGGACFGSFQNCPTK 328
           HP +  Y+ L  GAC G    C  K
Sbjct: 529 HPNHPIYINLTKGACMGCSNACSRK 553


>At1g30850.1 68414.m03773 hypothetical protein
          Length = 300

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -2

Query: 57  HGRAATSSPQRRVR 16
           H R+A SSPQRRVR
Sbjct: 247 HRRSAESSPQRRVR 260


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,039,081
Number of Sequences: 28952
Number of extensions: 81946
Number of successful extensions: 206
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 477939072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)