Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00059
(756 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 29 0.72
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 27 2.9
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 27 2.9
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 27 3.8
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 27 3.8
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p... 26 5.0
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 26 5.0
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 26 6.7
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 26 6.7
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 25 8.8
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 29.1 bits (62), Expect = 0.72
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = -3
Query: 415 TWWYCGP--RH*SELSRHKHRWRYTSQSD 335
T+WY P RH E + H W Y+S D
Sbjct: 44 TYWYPPPPPRHHKEHKKSHHHWEYSSDDD 72
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 27.1 bits (57), Expect = 2.9
Identities = 18/75 (24%), Positives = 33/75 (44%)
Frame = +1
Query: 265 ASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLISAVVRNTTTFKSSITERAE 444
A+ T P +T +T+T P + T + +TT+ V T + ++T E
Sbjct: 89 AAMTTPMVETTTIPTVETTTTP--MVETTTITPMVETTTITPMVEAMITLMEETMTTPME 146
Query: 445 KCLTALKARCLTSPV 489
+ T L +T+P+
Sbjct: 147 ETTTILPMAAMTTPM 161
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 27.1 bits (57), Expect = 2.9
Identities = 20/77 (25%), Positives = 37/77 (48%)
Frame = -3
Query: 235 FRRHVCAAVDFQARVFHVDFFVFILFIRDLVEKVVNSGYFCLMVSLLVQALRHSVLDVFS 56
F V + V+ RV+ VD + + + + + + L +SLL+ A + + ++S
Sbjct: 357 FDEFVTSDVEGSLRVYKVDGKAPVSTVSHAHDNSIVALRYNLRISLLLTASSDTTVKLWS 416
Query: 55 LRDVPAAELLRRWTFSS 5
D A E L ++FSS
Sbjct: 417 RGDAGAFECLHVFSFSS 433
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = -2
Query: 431 VILDLNVVVLRTTALIRVVEA*ASLAVYFAIRLPGFVEVCAHHASGVCLVGTV 273
++ LN+ V + +++++E A + I PG +E+ ASG + T+
Sbjct: 80 IMTSLNLFVTKFDQVLKILEKRAPTVDHILIDTPGQIEIFQWSASGSIICDTL 132
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 382 LISAVVRNTTTFKSSITERAEKCLTALKARCLTSPV 489
LI + +N T F + E+ CL LK + + SP+
Sbjct: 82 LIELLQKNHTIFPFELCEKIVLCLVLLKNKTVISPI 117
>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 571
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -3
Query: 568 LHLQVMRGQLSTFSHVAHDVKSQSRMRRGKSDISLSVQSGISR 440
L + + G+ + + A D+K S K+ I++S + GIS+
Sbjct: 317 LAIDIAEGRSNPITKCAFDIKDSSMQSFTKTTITISKRKGISK 359
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 118 FCLMVSLLVQALRHSVLDVFSLRD 47
FCL ++ ++ LR+SV V +LRD
Sbjct: 449 FCLRINPMLDGLRNSVATVDALRD 472
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 8 TERPTSEQLGRGDISEAEHIEHGMSES-LDEKR 103
TE+ E + RG+IS++E +H + + L EK+
Sbjct: 163 TEKQRKEAIARGEISDSEDEKHTVKQKPLREKK 195
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = +1
Query: 259 VTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLISAVVR 402
V + +P + ++W S +P R Y STT ++ VR
Sbjct: 206 VVTQKQIPNKMDMESWVKYMSLEPSKRGRIYDVLSLEVSTTKLAYYVR 253
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 8.8
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +1
Query: 205 SPLQRRRVCEINEHGDACVTASRTVPTRQTPDAWCAQTSTKPGNRIA---KYTASDAYAS 375
S L+ R+ + + D + + RTVP P ++C + + G +IA S+ +A+
Sbjct: 641 SALESSRLSSLFKEFD--LVSFRTVPAIHCPYSYCMEITNSSGWKIAYSGDTRPSEDFAN 698
Query: 376 TTLISAVVRNTTTFKSSITERAEK 447
S ++ + T + S+ E A K
Sbjct: 699 IAKDSTLLIHEATLEDSMHEIAIK 722
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,088,256
Number of Sequences: 5004
Number of extensions: 62684
Number of successful extensions: 189
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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