Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00059
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0739 + 20584264-20584626,20586943-20587011,20587696-205880... 32 0.57
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 30 1.7
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 29 4.0
07_03_1296 + 25583195-25584385 29 5.3
03_02_0520 + 9092020-9092079,9092253-9093047 29 5.3
11_06_0344 + 22540436-22540737,22541304-22543545 28 7.0
04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431 28 7.0
03_02_0781 + 11141469-11141486,11141855-11141978,11142024-111423... 28 7.0
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730... 28 9.2
06_01_0985 - 7646772-7647451,7647957-7648107 28 9.2
05_06_0246 + 26656629-26656907,26657001-26657228,26657595-266576... 28 9.2
>08_02_0739 +
20584264-20584626,20586943-20587011,20587696-20588006,
20588447-20588648,20588887-20588958
Length = 338
Score = 31.9 bits (69), Expect = 0.57
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +3
Query: 306 VCTNFNETWQSDCEVYRQRCLCLDNSDQCRGPQYHHVQIEYYGTCREMPDCTESEM--SD 479
+CTN + DC R C D+ QCRG + + E G C ++ + +E+E+ SD
Sbjct: 232 MCTNVRLVF--DCT--RDGCRRKDSWAQCRGCFFCVARCETCGGCIDLEELSETELACSD 287
Query: 480 FPRRMRDWL-LTSCAT 524
F M WL L C+T
Sbjct: 288 F-LCMECWLPLPKCST 302
>04_03_0582 +
17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 334 NRIAKYTASDAYASTTLISAVVRNTTTFKSSITERAEK-CLTALKARCLTSPVACGTG 504
++I S + S +I A+ RN + + S+ E + C++ K + LT+PVA G G
Sbjct: 380 HKIGPVEESASLPSMEMIPAI-RNLNSHQESLEESSSADCISPTKRKALTAPVAKGLG 436
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 268 SRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAY 369
+R P QTPDA A + T+P ++ +A +AY
Sbjct: 380 TRIQPYTQTPDADSATSGTQPAAKLNSISAMEAY 413
>07_03_1296 + 25583195-25584385
Length = 396
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 599 NDA*GLIPPPAPSSGNEGSA 540
N A L PPPAP+SG + SA
Sbjct: 126 NPAPALAPPPAPASGGDASA 145
>03_02_0520 + 9092020-9092079,9092253-9093047
Length = 284
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -3
Query: 73 VLDVFSLRDVPAAELLRRWTFSSR 2
VLD+ +++ +PA +L+RWT +R
Sbjct: 138 VLDLMNIKSLPAQYILKRWTREAR 161
>11_06_0344 + 22540436-22540737,22541304-22543545
Length = 847
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 412 TFKSSITERAEKCLTALKARCLTSP 486
T +S ERAE+C + L RC+ P
Sbjct: 299 TLQSGFEERAEECFSQLVQRCIIRP 323
>04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431
Length = 370
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -3
Query: 136 VVNSGYFCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSR 2
+ + G F + L AL+ VLD+ ++ +PA +L+RWT +R
Sbjct: 177 ICSCGQFNRIGILCGHALK--VLDLMNIESLPAQYILKRWTREAR 219
>03_02_0781 +
11141469-11141486,11141855-11141978,11142024-11142340,
11143219-11143509,11143751-11143956,11144048-11144327
Length = 411
Score = 28.3 bits (60), Expect = 7.0
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Frame = -2
Query: 431 VILDLNVVVLRTTALIRVVEA*ASLAVYFAIRLPGFVEVCAHHASGVCL----------- 285
++ LN+ + +I V+E A Y + PG +E+ ASG +
Sbjct: 140 ILTSLNLFSTKFDEVISVIERRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTV 199
Query: 284 VGTVLDAVTHASPCSLISQTRLRCSGLSGKGLP 186
V V+D SP + +S CS L LP
Sbjct: 200 VAYVVDTPRSTSPVTFMSNMLYACSILYKTRLP 232
>12_01_0797 +
7300370-7300506,7300682-7300798,7301903-7302443,
7302885-7304042,7304133-7304291,7304397-7304504,
7305045-7305304,7305936-7306101,7307025-7307050,
7307318-7307402,7307486-7307695,7308815-7308872,
7308964-7309037,7309323-7309373,7309576-7309664,
7310027-7310104,7310164-7310269
Length = 1140
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 124 GYFCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSR 2
G F L AL+ VLD+ +++ +P+ +L+RWT +R
Sbjct: 484 GMFSRTGILCAHALK--VLDLMNIKSLPSQYVLKRWTRGAR 522
>06_01_0985 - 7646772-7647451,7647957-7648107
Length = 276
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 73 VLDVFSLRDVPAAELLRRWTFSSR 2
VLDV +++ +P +L+RWT +R
Sbjct: 240 VLDVMNIKSLPKRYILKRWTREAR 263
>05_06_0246 +
26656629-26656907,26657001-26657228,26657595-26657630,
26658362-26658475,26658562-26659167
Length = 420
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 96 SSKLSDIPCSMCSASEMSPRPSCSDVG 16
S+ SD PC + SAS S P+ SD G
Sbjct: 310 SASSSDFPCDVSSASTSSATPARSDGG 336
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,886,271
Number of Sequences: 37544
Number of extensions: 523338
Number of successful extensions: 1580
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1580
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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