Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00059
         (756 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            25   1.9  
AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ chann...    24   4.4  
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    23   7.7  

>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = -3

Query: 235  FRRHVCAAVDFQARVFHVDFFVFILF--IRDLVEKVVNSGYFCLMVSLLVQALRHSVLDV 62
            FR  +    D+   + H   F+++    ++ L +  +  G++ L+VSL +  +  S +  
Sbjct: 2962 FRAQLALGRDWSRLIMHTKNFLYVGVRNLQTLQKGFLTVGFYSLIVSLRMSLISESAIPE 3021

Query: 61   FSLRDVPAAELLRRWTFS 8
            F+  +     L     FS
Sbjct: 3022 FTAAEASINVLFSTEQFS 3039


>AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ channel
           protein.
          Length = 574

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +1

Query: 556 PEDGAGGGIKP-HASLGQCRY 615
           PEDGAG   +P  A L  CRY
Sbjct: 169 PEDGAGCATQPCSALLKACRY 189


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 488 SHAGLAFNIMRDMAERREL 544
           +H G AFN+M   A  RE+
Sbjct: 10  NHCGAAFNLMWQTAREREV 28


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 833,407
Number of Sequences: 2352
Number of extensions: 17743
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 78170964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)