Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00059
(756 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L21758-1|AAA16827.1| 264|Caenorhabditis elegans osteonectin pro... 89 3e-18
AF036692-3|AAB88325.1| 264|Caenorhabditis elegans Osteonectin (... 89 3e-18
Z81107-8|CAB03231.3| 282|Caenorhabditis elegans Hypothetical pr... 31 0.67
U00035-2|AAA50644.2| 413|Caenorhabditis elegans Hypothetical pr... 31 0.67
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 29 2.7
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 29 2.7
>L21758-1|AAA16827.1| 264|Caenorhabditis elegans osteonectin
protein.
Length = 264
Score = 89.0 bits (211), Expect = 3e-18
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Frame = +3
Query: 258 CNCIKDCP-YETDSRRMVCTNFNETWQSDCEVYRQRCLCLDNSDQCRGPQYHHVQIEYYG 434
C CI CP + D VC N N+T+ S C++YR+RCLC S +C V +EY G
Sbjct: 74 CECISKCPELDGDPMDKVCANNNQTFTSLCDLYRERCLCKRKSKECSKAFNAKVHLEYLG 133
Query: 435 TCREMPDCTESEMSDFPRRMRDWL 506
C+++ +CTE M+ FP RM DWL
Sbjct: 134 ECKKLDECTEEHMAQFPERMADWL 157
Score = 83.4 bits (197), Expect = 2e-16
Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 3/94 (3%)
Frame = +2
Query: 482 PPSHAGLAFNIMRDMAERRELTPHYLKMER---EAESNLTRRWANAAIWKWCDLDAQTND 652
P A F +M+++ +RREL H L+ E EAE++ ++ IWK+C+LD + +D
Sbjct: 150 PERMADWLFQVMKELKKRREL--HKLEWEELLSEAENDDEKKHVYPVIWKFCELDTKPHD 207
Query: 653 RFVSRHELFPIRAPLMALEHCIAPFLDRCDADDD 754
+ VS HEL PI AP++ +E CI PFL+ CDA++D
Sbjct: 208 KSVSHHELIPITAPVIPMESCIKPFLEGCDANND 241
>AF036692-3|AAB88325.1| 264|Caenorhabditis elegans Osteonectin
(sparc) related protein1 protein.
Length = 264
Score = 89.0 bits (211), Expect = 3e-18
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Frame = +3
Query: 258 CNCIKDCP-YETDSRRMVCTNFNETWQSDCEVYRQRCLCLDNSDQCRGPQYHHVQIEYYG 434
C CI CP + D VC N N+T+ S C++YR+RCLC S +C V +EY G
Sbjct: 74 CECISKCPELDGDPMDKVCANNNQTFTSLCDLYRERCLCKRKSKECSKAFNAKVHLEYLG 133
Query: 435 TCREMPDCTESEMSDFPRRMRDWL 506
C+++ +CTE M+ FP RM DWL
Sbjct: 134 ECKKLDECTEEHMAQFPERMADWL 157
Score = 83.4 bits (197), Expect = 2e-16
Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 3/94 (3%)
Frame = +2
Query: 482 PPSHAGLAFNIMRDMAERRELTPHYLKMER---EAESNLTRRWANAAIWKWCDLDAQTND 652
P A F +M+++ +RREL H L+ E EAE++ ++ IWK+C+LD + +D
Sbjct: 150 PERMADWLFQVMKELKKRREL--HKLEWEELLSEAENDDEKKHVYPVIWKFCELDTKPHD 207
Query: 653 RFVSRHELFPIRAPLMALEHCIAPFLDRCDADDD 754
+ VS HEL PI AP++ +E CI PFL+ CDA++D
Sbjct: 208 KSVSHHELIPITAPVIPMESCIKPFLEGCDANND 241
>Z81107-8|CAB03231.3| 282|Caenorhabditis elegans Hypothetical
protein R07H5.9 protein.
Length = 282
Score = 31.5 bits (68), Expect = 0.67
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 184 HGRPLPESPLQRRRVCEINEHGDACVTASRTVPTRQT 294
+G P P R + CE++E + VTAS + PT T
Sbjct: 122 NGLPFPPDLRSRSQQCEVSESRSSSVTASSSAPTSTT 158
>U00035-2|AAA50644.2| 413|Caenorhabditis elegans Hypothetical
protein R01H2.2 protein.
Length = 413
Score = 31.5 bits (68), Expect = 0.67
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +1
Query: 226 VCEINEHGDACVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLISAVVRN 405
+C + D ++ T PT TP T+TK +K A + ST + +VVR
Sbjct: 291 ICYLTNICDIYSPSTTTTPTTTTPTTTTPTTTTKITASTSKPPALNETVSTITLKSVVRP 350
Query: 406 TT 411
TT
Sbjct: 351 TT 352
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Frame = +3
Query: 276 CPYETDSRRMVCTNFNETWQSDCEVYRQRCLCLDN-----SDQCRGPQYHHVQIEYYGTC 440
CP TD + VC + +T+ ++C + C+ N + C + + ++Y C
Sbjct: 465 CPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSACEACKLKKEKCDFYSAC 524
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 246 RRRMCNCIKDCPYETDSRRMVCTNFNETWQSDCEVYRQRC 365
R C C C D R VC ET+ ++CE+ ++ C
Sbjct: 387 RTAECECPNRCE---DVMRPVCATNGETFDNECEMKKKSC 423
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Frame = +3
Query: 276 CPYETDSRRMVCTNFNETWQSDCEVYRQRCLCLDN-----SDQCRGPQYHHVQIEYYGTC 440
CP TD + VC + +T+ ++C + C+ N + C + + ++Y C
Sbjct: 473 CPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSACEACKLKKEKCDFYSAC 532
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 246 RRRMCNCIKDCPYETDSRRMVCTNFNETWQSDCEVYRQRC 365
R C C C D R VC ET+ ++CE+ ++ C
Sbjct: 395 RTAECECPNRCE---DVMRPVCATNGETFDNECEMKKKSC 431
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,955,570
Number of Sequences: 27780
Number of extensions: 393784
Number of successful extensions: 1200
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -