Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00059
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42120.1 68418.m05128 lectin protein kinase family protein co...    31   0.83 
At2g32730.1 68415.m04005 26S proteasome regulatory subunit, puta...    30   1.9  
At1g04810.1 68414.m00477 26S proteasome regulatory subunit, puta...    30   1.9  
At1g79360.1 68414.m09248 transporter-related low similarity to S...    29   3.3  
At4g21800.2 68417.m03154 ATP-binding family protein contains Pfa...    28   5.8  
At4g21800.1 68417.m03153 ATP-binding family protein contains Pfa...    28   5.8  

>At5g42120.1 68418.m05128 lectin protein kinase family protein
           contains Pfam domains PF00139: Legume lectins beta
           domain and PF00069: Protein kinase domain
          Length = 691

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = -2

Query: 632 DRTISI*RHWPNDA*GLIPPPAPSSGNEGSALYVQPCR 519
           DRTIS+ +  P       PP  PSS   G ALYV P +
Sbjct: 45  DRTISLTQQQPCFPSVTTPPSKPSSSGIGRALYVYPIK 82


>At2g32730.1 68415.m04005 26S proteasome regulatory subunit,
           putative contains similarity to 26S proteasome
           regulatory subunit S1 SP:O88761, GI:3288594 from [Rattus
           norvegicus]
          Length = 1004

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/96 (21%), Positives = 42/96 (43%)
 Frame = +1

Query: 358 SDAYASTTLISAVVRNTTTFKSSITERAEKCLTALKARCLTSPVACGTGF*HHARHG*T* 537
           S  +++T   +A++   TT  + + E  +    A      ++    G     H + G + 
Sbjct: 372 SVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSL 431

Query: 538 RADPSLPEDGAGGGIKPHASLGQCRYMEMVRSGRSD 645
            A P LP+ GAGGG  P++  G    + ++ +   +
Sbjct: 432 MA-PYLPQGGAGGGGSPYSEGGALYALGLIHANHGE 466


>At1g04810.1 68414.m00477 26S proteasome regulatory subunit,
           putative contains similarity to 26S proteasome
           regulatory subunit S1 SP:O88761, GI:3288594 from [Rattus
           norvegicus]
          Length = 1001

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/96 (21%), Positives = 42/96 (43%)
 Frame = +1

Query: 358 SDAYASTTLISAVVRNTTTFKSSITERAEKCLTALKARCLTSPVACGTGF*HHARHG*T* 537
           S  +++T   +A++   TT  + + E  +    A      ++    G     H + G + 
Sbjct: 372 SVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSL 431

Query: 538 RADPSLPEDGAGGGIKPHASLGQCRYMEMVRSGRSD 645
            A P LP+ GAGGG  P++  G    + ++ +   +
Sbjct: 432 MA-PYLPQGGAGGGGSPYSEGGALYALGLIHANHGE 466


>At1g79360.1 68414.m09248 transporter-related low similarity to
           SP|O76082 Organic cation/carnitine transporter 2 (Solute
           carrier family 22, member 5) (High-affinity
           sodium-dependent carnitine cotransporter) {Homo
           sapiens}; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 527

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -2

Query: 317 VCAHHASGVCLVGTVLDAVTHASPCSLISQTRLRCSGLSGKGLP 186
           +C    S +C++     +  ++   S+IS+  L+C+G   KGLP
Sbjct: 73  ICHESISNICILPKTAWSWDYSPHVSVISEWGLQCAGSFVKGLP 116


>At4g21800.2 68417.m03154 ATP-binding family protein contains Pfam
           domain, PF03029: Conserved hypothetical ATP binding
           protein
          Length = 379

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
 Frame = -2

Query: 431 VILDLNVVVLRTTALIRVVEA*ASLAVYFAIRLPGFVEVCAHHASGVCL----------- 285
           ++  LN+   +   ++ V+E  A    Y  +  PG +E+    ASG  +           
Sbjct: 113 ILTSLNLFATKFDEVVSVIEKRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTV 172

Query: 284 VGTVLDAVTHASPCSLISQTRLRCSGLSGKGLP 186
           V  V+D    +SP + +S     CS L    LP
Sbjct: 173 VTYVVDTPRSSSPITFMSNMLYACSILYKTRLP 205


>At4g21800.1 68417.m03153 ATP-binding family protein contains Pfam
           domain, PF03029: Conserved hypothetical ATP binding
           protein
          Length = 379

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
 Frame = -2

Query: 431 VILDLNVVVLRTTALIRVVEA*ASLAVYFAIRLPGFVEVCAHHASGVCL----------- 285
           ++  LN+   +   ++ V+E  A    Y  +  PG +E+    ASG  +           
Sbjct: 113 ILTSLNLFATKFDEVVSVIEKRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTV 172

Query: 284 VGTVLDAVTHASPCSLISQTRLRCSGLSGKGLP 186
           V  V+D    +SP + +S     CS L    LP
Sbjct: 173 VTYVVDTPRSSSPITFMSNMLYACSILYKTRLP 205


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,065,818
Number of Sequences: 28952
Number of extensions: 369812
Number of successful extensions: 1052
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)