Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00058
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   160   1e-40
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   157   9e-40
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   102   4e-23
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    71   1e-13
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    26   3.7  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    25   6.5  
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   8.6  
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...    25   8.6  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    25   8.6  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    25   8.6  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    25   8.6  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    25   8.6  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   8.6  

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  160 bits (388), Expect = 1e-40
 Identities = 67/87 (77%), Positives = 81/87 (93%)
 Frame = +1

Query: 247 RGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDV 426
           +GK+VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD 
Sbjct: 58  QGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDE 117

Query: 427 VLDRIRKLADQCTGLQGFLVFHSFGGG 507
           V D+IR++AD C+GLQGFLVFHSFGGG
Sbjct: 118 VTDKIRRIADNCSGLQGFLVFHSFGGG 144



 Score = 94.7 bits (225), Expect = 7e-21
 Identities = 40/59 (67%), Positives = 45/59 (76%)
 Frame = +2

Query: 77  MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
           MRE IS+H+GQAG QIGNACWELYCLEHGIQP+G M  +      D  F+TFFSETG G
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQG 59


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  157 bits (381), Expect = 9e-40
 Identities = 64/87 (73%), Positives = 81/87 (93%)
 Frame = +1

Query: 247 RGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDV 426
           +GK VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++D 
Sbjct: 62  QGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDS 121

Query: 427 VLDRIRKLADQCTGLQGFLVFHSFGGG 507
           VL+RIR++AD C+GLQGFLVFHSFGGG
Sbjct: 122 VLERIRRMADNCSGLQGFLVFHSFGGG 148



 Score = 87.0 bits (206), Expect = 1e-18
 Identities = 43/64 (67%), Positives = 47/64 (73%), Gaps = 5/64 (7%)
 Frame = +2

Query: 77  MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSD-----KTLGGGDDSFNTFFSE 241
           MRE ISVH+GQAGVQIGNACWELYCLEHGI PDG  P++     K     +D F TFFSE
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59

Query: 242 TGAG 253
           TG G
Sbjct: 60  TGQG 63


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  102 bits (244), Expect = 4e-23
 Identities = 45/86 (52%), Positives = 60/86 (69%)
 Frame = +1

Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
           GK+VPRAV VDLEP  +D V++G +  LF P+ +I G+  A N +A+GHYT G E+ D V
Sbjct: 57  GKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAV 116

Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
           LD +R+ A+ C  LQGF + HS GGG
Sbjct: 117 LDVVRREAEACDALQGFQLTHSLGGG 142



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +2

Query: 77  MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
           MRE + +  GQ G Q+G A W     EHG+   G      T     +  N +F+E   G
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHG--TSEAQHERLNVYFNEAAGG 57


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 70.5 bits (165), Expect = 1e-13
 Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
 Frame = +1

Query: 253 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDV 426
           +++PRA+ +DLEP VV+ + + TY  L++PE ++  K    A NN+A G Y+  + I + 
Sbjct: 59  RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFED 117

Query: 427 VLDRIRKLADQCTGLQGFLVFHSFGGG 507
           ++D I + AD    L+GF + HS  GG
Sbjct: 118 IMDMIDREADGSDSLEGFSLLHSIAGG 144



 Score = 49.6 bits (113), Expect = 3e-07
 Identities = 25/55 (45%), Positives = 33/55 (60%)
 Frame = +2

Query: 80  RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSET 244
           RE I++  GQ G QIG+  W+  CLEHGI PDG + S  T   G D  + FF ++
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQS 55


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +2

Query: 236 SETGAGSTCHELSLLIWNQL*STRFVPALTVNCSTPSSSSLAKRMLPITMPED 394
           S+T    T +   L  W++   ++ +  L  + S P  S L + +   T+PED
Sbjct: 2   SQTAPSDTEYNQRLERWSERLKSQTISHLPTDYSRPVPSRLVEAVFERTLPED 54


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 226 HVLQRDRRGKHVPRAVFVDLEPTVVDEVRT 315
           H+L  D RGK+ P  +F  +E  +  E +T
Sbjct: 28  HLLSHDYRGKNGPACLFKRVENVIEMEPKT 57


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 269 LSLLIWNQL*STRFVPALTVNCSTPSSSSLAKRMLPI 379
           LSLL  + L   +  P+   N S P  S   +R++P+
Sbjct: 146 LSLLSTSSLQQRKITPSNLSNTSKPMDSKQLERLIPV 182


>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = +2

Query: 158 HGIQPDGQMPSDKTLGGGDDSF--NTFFSETGAGSTCHELSLLIWNQL 295
           H IQ D   P  K L G D +     F       S CH L+L+ W  L
Sbjct: 71  HFIQHD--WPQSKVLSGFDHASLRRGFQVYREVCSACHSLNLIAWRHL 116


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 282 INKDSSWHVLPAPVSLK 232
           +NK S WH L  P+ LK
Sbjct: 566 LNKQSQWHDLENPIVLK 582


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 384 CPRTLYHWQGDRRRSFGQDQEAGGPMHRASGFP 482
           C   L  W+  +RR  G + ++  P H ++  P
Sbjct: 50  CSAVLAEWKRRKRRLKGSNSDSDSPHHASNPHP 82


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 91  LRSHRSSRRTDWQRLLGAVLP 153
           ++ HR  RR DW +L   +LP
Sbjct: 344 IKKHRIYRRIDWNKLEKRMLP 364


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 324 VSAGTNLVDYSWFQINKDSSWHVLPAP 244
           +SAGT+     + +  KD++WH +  P
Sbjct: 386 LSAGTDQTTRLFARFKKDNAWHEMARP 412


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 7/24 (29%), Positives = 17/24 (70%)
 Frame = +1

Query: 379 NYARGHYTIGKEIVDVVLDRIRKL 450
           N+ + HY++  E+ DV++ ++ +L
Sbjct: 64  NHKKPHYSVETEVKDVIISKVVEL 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,886
Number of Sequences: 5004
Number of extensions: 43600
Number of successful extensions: 130
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)