Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00058
(508 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 173 5e-44
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 173 5e-44
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 173 5e-44
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 173 5e-44
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 167 3e-42
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 167 3e-42
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 167 3e-42
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 167 3e-42
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 166 7e-42
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 165 1e-41
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 164 4e-41
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 164 4e-41
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 163 5e-41
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 159 1e-39
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 159 1e-39
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 159 1e-39
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 108 2e-24
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 108 2e-24
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 108 3e-24
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 106 8e-24
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 102 2e-22
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 102 2e-22
Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical p... 91 4e-19
Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical p... 91 4e-19
Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical p... 55 3e-08
AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin... 55 3e-08
AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso... 28 3.4
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso... 28 3.4
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor... 28 3.4
AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensor... 28 3.4
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor... 28 3.4
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor... 28 3.4
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 28 3.4
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor... 28 3.4
AL021387-2|CAA16168.1| 463|Caenorhabditis elegans Hypothetical ... 28 4.5
AF273769-1|AAG15118.1| 463|Caenorhabditis elegans nuclear recep... 28 4.5
AF083222-1|AAD03680.1| 463|Caenorhabditis elegans nuclear recep... 28 4.5
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 28 4.5
Z81523-11|CAB04247.2| 403|Caenorhabditis elegans Hypothetical p... 27 5.9
AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 27 5.9
AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 27 5.9
AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 27 5.9
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 173 bits (422), Expect = 5e-44
Identities = 76/86 (88%), Positives = 82/86 (95%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
G+HVPRAV VDLEPTV+DE+RTGTYR LFHPEQLITGKEDAANNYARGHYTIGKEI+D+
Sbjct: 59 GRHVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLT 118
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LDRIR+LAD CTGLQGFLVFHSFGGG
Sbjct: 119 LDRIRRLADNCTGLQGFLVFHSFGGG 144
Score = 124 bits (299), Expect = 4e-29
Identities = 53/59 (89%), Positives = 57/59 (96%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
MRE IS+HIGQAGVQIGNACWELYCLEHGIQPDGQMPSDK+LGG DDSF+TFFSETG+G
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSG 59
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 173 bits (422), Expect = 5e-44
Identities = 76/86 (88%), Positives = 82/86 (95%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
G+HVPRAV VDLEPTV+DE+RTGTYR LFHPEQLITGKEDAANNYARGHYTIGKEI+D+
Sbjct: 58 GRHVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLT 117
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LDRIR+LAD CTGLQGFLVFHSFGGG
Sbjct: 118 LDRIRRLADNCTGLQGFLVFHSFGGG 143
Score = 122 bits (294), Expect = 1e-28
Identities = 52/58 (89%), Positives = 56/58 (96%)
Frame = +2
Query: 80 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
RE IS+HIGQAGVQIGNACWELYCLEHGIQPDGQMPSDK+LGG DDSF+TFFSETG+G
Sbjct: 1 REVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSG 58
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 173 bits (422), Expect = 5e-44
Identities = 76/86 (88%), Positives = 82/86 (95%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
G+HVPRAV VDLEPTV+DE+RTGTYR LFHPEQLITGKEDAANNYARGHYTIGKEI+D+
Sbjct: 59 GRHVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLT 118
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LDRIR+LAD CTGLQGFLVFHSFGGG
Sbjct: 119 LDRIRRLADNCTGLQGFLVFHSFGGG 144
Score = 124 bits (299), Expect = 4e-29
Identities = 53/59 (89%), Positives = 57/59 (96%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
MRE IS+HIGQAGVQIGNACWELYCLEHGIQPDGQMPSDK+LGG DDSF+TFFSETG+G
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSG 59
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 173 bits (422), Expect = 5e-44
Identities = 76/86 (88%), Positives = 82/86 (95%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
G+HVPRAV VDLEPTV+DE+RTGTYR LFHPEQLITGKEDAANNYARGHYTIGKEI+D+
Sbjct: 59 GRHVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLT 118
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LDRIR+LAD CTGLQGFLVFHSFGGG
Sbjct: 119 LDRIRRLADNCTGLQGFLVFHSFGGG 144
Score = 124 bits (299), Expect = 4e-29
Identities = 53/59 (89%), Positives = 57/59 (96%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
MRE IS+HIGQAGVQIGNACWELYCLEHGIQPDGQMPSDK+LGG DDSF+TFFSETG+G
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSG 59
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 167 bits (407), Expect = 3e-42
Identities = 70/86 (81%), Positives = 83/86 (96%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
G++VPR++FVDLEPTVVDE+RTGTY++LFHPEQ+ITGKEDAANNYARGHYT+GKE++D V
Sbjct: 57 GRYVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTV 116
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LDRIR+LAD C+GLQGF VFHSFGGG
Sbjct: 117 LDRIRRLADNCSGLQGFFVFHSFGGG 142
Score = 100 bits (240), Expect = 5e-22
Identities = 44/59 (74%), Positives = 50/59 (84%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDG MP+ T G +SF TFFS+TG+G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEG--ESFTTFFSDTGSG 57
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 167 bits (407), Expect = 3e-42
Identities = 70/86 (81%), Positives = 83/86 (96%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
G++VPR++FVDLEPTVVDE+RTGTY++LFHPEQ+ITGKEDAANNYARGHYT+GKE++D V
Sbjct: 57 GRYVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTV 116
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LDRIR+LAD C+GLQGF VFHSFGGG
Sbjct: 117 LDRIRRLADNCSGLQGFFVFHSFGGG 142
Score = 102 bits (244), Expect = 2e-22
Identities = 45/59 (76%), Positives = 50/59 (84%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDG MPSD+ G +SF TFFS+TG G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADG--ESFTTFFSDTGNG 57
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 167 bits (407), Expect = 3e-42
Identities = 70/86 (81%), Positives = 83/86 (96%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
G++VPR++FVDLEPTVVDE+RTGTY++LFHPEQ+ITGKEDAANNYARGHYT+GKE++D V
Sbjct: 57 GRYVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTV 116
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LDRIR+LAD C+GLQGF VFHSFGGG
Sbjct: 117 LDRIRRLADNCSGLQGFFVFHSFGGG 142
Score = 102 bits (244), Expect = 2e-22
Identities = 45/59 (76%), Positives = 50/59 (84%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDG MPSD+ G +SF TFFS+TG G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADG--ESFTTFFSDTGNG 57
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 167 bits (407), Expect = 3e-42
Identities = 70/86 (81%), Positives = 83/86 (96%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
G++VPR++FVDLEPTVVDE+RTGTY++LFHPEQ+ITGKEDAANNYARGHYT+GKE++D V
Sbjct: 57 GRYVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTV 116
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LDRIR+LAD C+GLQGF VFHSFGGG
Sbjct: 117 LDRIRRLADNCSGLQGFFVFHSFGGG 142
Score = 100 bits (240), Expect = 5e-22
Identities = 44/59 (74%), Positives = 50/59 (84%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDG MP+ T G +SF TFFS+TG+G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEG--ESFTTFFSDTGSG 57
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 166 bits (404), Expect = 7e-42
Identities = 70/86 (81%), Positives = 82/86 (95%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
GKHVPRA+FVDLEPTV+DEVRTGTY +LFHPEQLI+GKEDAANNYARGHYTIGKE++DVV
Sbjct: 59 GKHVPRAIFVDLEPTVIDEVRTGTYAKLFHPEQLISGKEDAANNYARGHYTIGKELIDVV 118
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
+DR+R+L ++C LQGFL+FHSFGGG
Sbjct: 119 MDRVRRLTERCQSLQGFLIFHSFGGG 144
Score = 103 bits (247), Expect = 7e-23
Identities = 44/59 (74%), Positives = 49/59 (83%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
MRE +S+HIGQAGVQIGNACWELYCLEHGI PDG MP D + G D S+NTFFSET +G
Sbjct: 1 MREIVSIHIGQAGVQIGNACWELYCLEHGITPDGLMPDDTSYGVEDQSYNTFFSETPSG 59
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 165 bits (402), Expect = 1e-41
Identities = 70/86 (81%), Positives = 80/86 (93%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
GKHVPRA+ VDLEPT +DE+RTGTY+ LFHPEQL+TGKEDAANNYARGHYTIGKEI+DVV
Sbjct: 64 GKHVPRAIMVDLEPTPIDEIRTGTYKTLFHPEQLLTGKEDAANNYARGHYTIGKEIIDVV 123
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
+DR+R+L + C GLQGFLVFHSFGGG
Sbjct: 124 MDRVRRLVENCRGLQGFLVFHSFGGG 149
Score = 103 bits (248), Expect = 6e-23
Identities = 44/60 (73%), Positives = 51/60 (85%)
Frame = +2
Query: 74 KMRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
+ RE IS+H+GQAGVQ+GNACWELYCLEHGIQPDG + + +LG DDSFNTFFSET AG
Sbjct: 5 RSREVISIHVGQAGVQMGNACWELYCLEHGIQPDGMINEEDSLGVDDDSFNTFFSETMAG 64
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 164 bits (398), Expect = 4e-41
Identities = 68/86 (79%), Positives = 81/86 (94%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
G++VPR++FVDLEPTVVDE+RTG Y++LFHPEQ+ITGKEDAANNYARGHYT+GKE++D
Sbjct: 57 GRYVPRSIFVDLEPTVVDEIRTGNYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTT 116
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LDRIR+LAD C+GLQGF VFHSFGGG
Sbjct: 117 LDRIRRLADNCSGLQGFFVFHSFGGG 142
Score = 101 bits (241), Expect = 4e-22
Identities = 45/59 (76%), Positives = 50/59 (84%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDG MPS++ GG SF TFFS+TG G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGG--SFTTFFSDTGNG 57
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 164 bits (398), Expect = 4e-41
Identities = 68/86 (79%), Positives = 81/86 (94%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
G++VPR++FVDLEPTVVDE+RTG Y++LFHPEQ+ITGKEDAANNYARGHYT+GKE++D
Sbjct: 57 GRYVPRSIFVDLEPTVVDEIRTGNYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTT 116
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LDRIR+LAD C+GLQGF VFHSFGGG
Sbjct: 117 LDRIRRLADNCSGLQGFFVFHSFGGG 142
Score = 101 bits (241), Expect = 4e-22
Identities = 45/59 (76%), Positives = 50/59 (84%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDG MPS++ GG SF TFFS+TG G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGG--SFTTFFSDTGNG 57
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 163 bits (397), Expect = 5e-41
Identities = 68/86 (79%), Positives = 80/86 (93%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
G+HVPR++FVDLEPTVVDE+RTG Y++LFHPEQ++TGKEDAANNYARGHYT+GKEI+D
Sbjct: 56 GRHVPRSIFVDLEPTVVDEIRTGAYKKLFHPEQMLTGKEDAANNYARGHYTVGKEIIDTT 115
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LDRIR+LA+ C GLQGF VFHSFGGG
Sbjct: 116 LDRIRRLANNCEGLQGFFVFHSFGGG 141
Score = 85.8 bits (203), Expect = 2e-17
Identities = 41/60 (68%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDG-QMPSDKTLGGGDDSFNTFFSETGAG 253
MRE IS+H+GQAGVQIGNACWELYCLEHGI PDG M D G S TFFS+TG G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGILPDGTSMEPD----GNSGSLGTFFSDTGYG 56
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 159 bits (386), Expect = 1e-39
Identities = 68/86 (79%), Positives = 77/86 (89%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
GKHVPRA++VDLEPTV+DE+R G Y LFHP+Q+I GKEDAANNYARGHYTIGKE++DVV
Sbjct: 62 GKHVPRAIYVDLEPTVLDEIRNGVYGNLFHPDQIINGKEDAANNYARGHYTIGKELIDVV 121
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LDRIRK + C GLQGFLVFHSFGGG
Sbjct: 122 LDRIRKQTENCEGLQGFLVFHSFGGG 147
Score = 72.5 bits (170), Expect = 2e-13
Identities = 31/58 (53%), Positives = 39/58 (67%)
Frame = +2
Query: 80 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
REC+S+HIGQAG QIGNACWELYC+EHG+ G + ++ S FFSE+ G
Sbjct: 6 RECVSIHIGQAGAQIGNACWELYCIEHGLDEAGFLKEEEK-NKKQQSLQAFFSESMNG 62
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 159 bits (385), Expect = 1e-39
Identities = 67/86 (77%), Positives = 80/86 (93%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
GKHVPR +FVDLEPTVVDEVRTGTYR LFHPEQL++GKEDAAN YARG YTIG+E++DVV
Sbjct: 65 GKHVPRCLFVDLEPTVVDEVRTGTYRSLFHPEQLLSGKEDAANCYARGRYTIGREMIDVV 124
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
+DR+++LA+ C GLQGF++FHSFGGG
Sbjct: 125 MDRVKRLAENCNGLQGFVIFHSFGGG 150
Score = 90.2 bits (214), Expect = 7e-19
Identities = 38/58 (65%), Positives = 44/58 (75%)
Frame = +2
Query: 80 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
RE IS+H+GQAGVQIGNACWEL+CLEHGIQPDG D T ++ NTFF+ET G
Sbjct: 8 REVISIHVGQAGVQIGNACWELFCLEHGIQPDGYHVEDDTYDEETETINTFFAETAGG 65
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 159 bits (385), Expect = 1e-39
Identities = 67/86 (77%), Positives = 80/86 (93%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
GKHVPR +FVDLEPTVVDEVRTGTYR LFHPEQL++GKEDAAN YARG YTIG+E++DVV
Sbjct: 37 GKHVPRCLFVDLEPTVVDEVRTGTYRSLFHPEQLLSGKEDAANCYARGRYTIGREMIDVV 96
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
+DR+++LA+ C GLQGF++FHSFGGG
Sbjct: 97 MDRVKRLAENCNGLQGFVIFHSFGGG 122
Score = 46.8 bits (106), Expect = 9e-06
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +2
Query: 143 LYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
++CLEHGIQPDG D T ++ NTFF+ET G
Sbjct: 1 MFCLEHGIQPDGYHVEDDTYDEETETINTFFAETAGG 37
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 108 bits (260), Expect = 2e-24
Identities = 50/86 (58%), Positives = 62/86 (72%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
GK+VPRAV VDLEP +D VR+G + QLF P+ + G+ A NN+A+GHYT G E+VD V
Sbjct: 57 GKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNV 116
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LD IRK A+ C LQGF + HS GGG
Sbjct: 117 LDVIRKEAEGCDCLQGFQLTHSLGGG 142
Score = 47.2 bits (107), Expect = 7e-06
Identities = 21/42 (50%), Positives = 25/42 (59%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTL 202
MRE + V GQ G QIG+ WE+ EHGIQPDG + L
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGESDL 42
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 108 bits (260), Expect = 2e-24
Identities = 50/86 (58%), Positives = 62/86 (72%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
GK+VPRAV VDLEP +D VR+G + QLF P+ + G+ A NN+A+GHYT G E+VD V
Sbjct: 57 GKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNV 116
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LD IRK A+ C LQGF + HS GGG
Sbjct: 117 LDVIRKEAEGCDCLQGFQLTHSLGGG 142
Score = 46.8 bits (106), Expect = 9e-06
Identities = 21/42 (50%), Positives = 25/42 (59%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTL 202
MRE + V GQ G QIG+ WE+ EHGIQPDG + L
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGETDL 42
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 108 bits (259), Expect = 3e-24
Identities = 49/86 (56%), Positives = 62/86 (72%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
GK+VPRAV VDLEP +D VR+G + QLF P+ + G+ A NN+A+GHYT G E+VD V
Sbjct: 57 GKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNV 116
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LD +RK A+ C LQGF + HS GGG
Sbjct: 117 LDVVRKEAEGCDCLQGFQLTHSLGGG 142
Score = 48.0 bits (109), Expect = 4e-06
Identities = 24/59 (40%), Positives = 31/59 (52%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
MRE + V GQ G QIG WE+ EHGIQPDG + L + N +++E G
Sbjct: 1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIQPDGTYKGESDL--QLERINVYYNEANGG 57
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 106 bits (255), Expect = 8e-24
Identities = 48/86 (55%), Positives = 60/86 (69%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
GK+VPRA VDLEP +D VR G + QLF P+ + G+ A NN+A+GHYT G E+VD V
Sbjct: 57 GKYVPRACLVDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNV 116
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LD +RK A+ C LQGF + HS GGG
Sbjct: 117 LDVVRKEAESCDCLQGFQMTHSLGGG 142
Score = 44.0 bits (99), Expect = 6e-05
Identities = 22/59 (37%), Positives = 29/59 (49%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
MRE + + GQ G QIG WE+ EHGI P G D L + N +++E G
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGAYNGDSDL--QLERINVYYNEASGG 57
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 102 bits (244), Expect = 2e-22
Identities = 47/85 (55%), Positives = 60/85 (70%)
Frame = +1
Query: 253 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVL 432
K+VPRAV VDLEP +D VR+G + QLF P+ + G+ A NN+A+GHYT G E+VD VL
Sbjct: 58 KYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAELVDNVL 117
Query: 433 DRIRKLADQCTGLQGFLVFHSFGGG 507
D +RK A+ LQGF + HS GGG
Sbjct: 118 DVVRKEAESTDCLQGFQLTHSLGGG 142
Score = 48.4 bits (110), Expect = 3e-06
Identities = 23/58 (39%), Positives = 32/58 (55%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGA 250
MRE + + GQ G QIG+ WE+ EHGI P GQ D L + N +++E G+
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDL--QLERINVYYNEAGS 56
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 102 bits (244), Expect = 2e-22
Identities = 47/85 (55%), Positives = 60/85 (70%)
Frame = +1
Query: 253 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVL 432
K+VPRAV VDLEP +D VR+G + QLF P+ + G+ A NN+A+GHYT G E+VD VL
Sbjct: 58 KYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAELVDNVL 117
Query: 433 DRIRKLADQCTGLQGFLVFHSFGGG 507
D +RK A+ LQGF + HS GGG
Sbjct: 118 DVVRKEAESTDCLQGFQLTHSLGGG 142
Score = 48.4 bits (110), Expect = 3e-06
Identities = 23/58 (39%), Positives = 32/58 (55%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGA 250
MRE + + GQ G QIG+ WE+ EHGI P GQ D L + N +++E G+
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDL--QLERINVYYNEAGS 56
>Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 91.1 bits (216), Expect = 4e-19
Identities = 41/85 (48%), Positives = 58/85 (68%)
Frame = +1
Query: 253 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVL 432
K+VPRA+ VDL+P ++ VR+ Y +LF PE ++G+ A NN++RG+Y G EIVD VL
Sbjct: 58 KYVPRAILVDLDPESINYVRSTQYGKLFDPENAVSGESGAGNNWSRGYYEQGAEIVDKVL 117
Query: 433 DRIRKLADQCTGLQGFLVFHSFGGG 507
IR+ A+ L+GF + HS GGG
Sbjct: 118 SVIRREAEAADSLEGFQLIHSLGGG 142
Score = 43.2 bits (97), Expect = 1e-04
Identities = 19/39 (48%), Positives = 23/39 (58%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSD 193
M+E I+V +GQ G QIG WE EHG+Q DG D
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGD 39
>Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 91.1 bits (216), Expect = 4e-19
Identities = 41/85 (48%), Positives = 58/85 (68%)
Frame = +1
Query: 253 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVL 432
K+VPRA+ VDL+P ++ VR+ Y +LF PE ++G+ A NN++RG+Y G EIVD VL
Sbjct: 58 KYVPRAILVDLDPESINYVRSTQYGKLFDPENAVSGESGAGNNWSRGYYEQGAEIVDKVL 117
Query: 433 DRIRKLADQCTGLQGFLVFHSFGGG 507
IR+ A+ L+GF + HS GGG
Sbjct: 118 SVIRREAEAADSLEGFQLIHSLGGG 142
Score = 43.2 bits (97), Expect = 1e-04
Identities = 19/39 (48%), Positives = 23/39 (58%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSD 193
M+E I+V +GQ G QIG WE EHG+Q DG D
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGD 39
>Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical
protein F58A4.8 protein.
Length = 444
Score = 54.8 bits (126), Expect = 3e-08
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Frame = +1
Query: 256 HVPRAVFVDLEPTVVDEV-RTGTYRQLFHPEQLITGKED--AANNYARGHYTIGKEIVDV 426
+VPRAV VDLEP V++ + ++ + LF+ + + A NN+A G Y G+E+ +
Sbjct: 61 YVPRAVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQEK 119
Query: 427 VLDRIRKLADQCTGLQGFLVFHSFGGG 507
++D I + A+ L G L HS GG
Sbjct: 120 IMDIIIREAENTNNLDGILFTHSVSGG 146
Score = 34.7 bits (76), Expect = 0.039
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 89 ISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDD 217
++VH+GQ G Q+ A W+ EHGI GQ + + D
Sbjct: 8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDMNDKKD 50
>AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin
protein.
Length = 444
Score = 54.8 bits (126), Expect = 3e-08
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Frame = +1
Query: 256 HVPRAVFVDLEPTVVDEV-RTGTYRQLFHPEQLITGKED--AANNYARGHYTIGKEIVDV 426
+VPRAV VDLEP V++ + ++ + LF+ + + A NN+A G Y G+E+ +
Sbjct: 61 YVPRAVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQEK 119
Query: 427 VLDRIRKLADQCTGLQGFLVFHSFGGG 507
++D I + A+ L G L HS GG
Sbjct: 120 IMDIIIREAENTNNLDGILFTHSVSGG 146
Score = 34.7 bits (76), Expect = 0.039
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 89 ISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDD 217
++VH+GQ G Q+ A W+ EHGI GQ + + D
Sbjct: 8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDMNDKKD 50
>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform g protein.
Length = 1604
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 295 VVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 438
VV +++TG + PE+ + E A+N+Y + Y + K V ++D+
Sbjct: 625 VVHDMKTGEHPGYTKPEEFVRRIESASNDYIK--YDLQKPDVVTIIDK 670
>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform f protein.
Length = 1818
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 295 VVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 438
VV +++TG + PE+ + E A+N+Y + Y + K V ++D+
Sbjct: 839 VVHDMKTGEHPGYTKPEEFVRRIESASNDYIK--YDLQKPDVVTIIDK 884
>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform e protein.
Length = 1954
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 295 VVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 438
VV +++TG + PE+ + E A+N+Y + Y + K V ++D+
Sbjct: 975 VVHDMKTGEHPGYTKPEEFVRRIESASNDYIK--YDLQKPDVVTIIDK 1020
>AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform c protein.
Length = 1167
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 295 VVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 438
VV +++TG + PE+ + E A+N+Y + Y + K V ++D+
Sbjct: 1024 VVHDMKTGEHPGYTKPEEFVRRIESASNDYIK--YDLQKPDVVTIIDK 1069
>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform b protein.
Length = 1685
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 295 VVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 438
VV +++TG + PE+ + E A+N+Y + Y + K V ++D+
Sbjct: 1024 VVHDMKTGEHPGYTKPEEFVRRIESASNDYIK--YDLQKPDVVTIIDK 1069
>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform d protein.
Length = 1995
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 295 VVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 438
VV +++TG + PE+ + E A+N+Y + Y + K V ++D+
Sbjct: 1016 VVHDMKTGEHPGYTKPEEFVRRIESASNDYIK--YDLQKPDVVTIIDK 1061
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 295 VVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 438
VV +++TG + PE+ + E A+N+Y + Y + K V ++D+
Sbjct: 1027 VVHDMKTGEHPGYTKPEEFVRRIESASNDYIK--YDLQKPDVVTIIDK 1072
>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform a protein.
Length = 2007
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 295 VVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 438
VV +++TG + PE+ + E A+N+Y + Y + K V ++D+
Sbjct: 1028 VVHDMKTGEHPGYTKPEEFVRRIESASNDYIK--YDLQKPDVVTIIDK 1073
>AL021387-2|CAA16168.1| 463|Caenorhabditis elegans Hypothetical
protein H01A20.1 protein.
Length = 463
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 68 SYKMRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPS-DKT 199
+Y R I +AG + +C CLE G++PD P DKT
Sbjct: 86 NYVCRYSKKCRIDKAGRNVCRSCRFQKCLEVGMEPDAIRPDRDKT 130
>AF273769-1|AAG15118.1| 463|Caenorhabditis elegans nuclear receptor
NHR-3 protein.
Length = 463
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 68 SYKMRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPS-DKT 199
+Y R I +AG + +C CLE G++PD P DKT
Sbjct: 86 NYVCRYSKKCRIDKAGRNVCRSCRFQKCLEVGMEPDAIRPDRDKT 130
>AF083222-1|AAD03680.1| 463|Caenorhabditis elegans nuclear receptor
NHR-3 protein.
Length = 463
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 68 SYKMRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPS-DKT 199
+Y R I +AG + +C CLE G++PD P DKT
Sbjct: 86 NYVCRYSKKCRIDKAGRNVCRSCRFQKCLEVGMEPDAIRPDRDKT 130
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +2
Query: 176 GQMPSDKTLGGGDDSFNTFFSETG-AGSTCHELSLLIWNQL*STRFVPALTVNCSTPSSS 352
G MP+D+ + S N+ +S+ A C++ + + ST T S P+S+
Sbjct: 297 GTMPTDQNVNSVITSDNSTYSDVHTAPQACNKNIIQTDCPVCSTAAPVVCTTASSAPAST 356
Query: 353 SLAKRMLPITMPEDTI 400
++ +P+T + T+
Sbjct: 357 AVVTTTMPVTTVQTTV 372
>Z81523-11|CAB04247.2| 403|Caenorhabditis elegans Hypothetical
protein F32H2.7 protein.
Length = 403
Score = 27.5 bits (58), Expect = 5.9
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +3
Query: 90 SPFTSVKPAYRLATPAGSC----TASSMESSLMVRCRQIRPSAVE 212
SP T V A +ATP+GSC TA +ES +R Q +AVE
Sbjct: 334 SPTTGVLTAQSIATPSGSCQSVFTAKEIES---IRSSQDVLTAVE 375
>AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 486
Score = 27.5 bits (58), Expect = 5.9
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +2
Query: 32 AFFF*VVYLRKSSYKM--RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLG 205
AFF V L KS + R+ +VH QI +C CL +G++P G P +
Sbjct: 34 AFFRRTVALTKSFKCITGRDDCNVHYSMH--QICRSCRHKKCLSNGMKPGGVQPKKPNIE 91
Query: 206 GGDDSFNTFFSETG 247
G FF+++G
Sbjct: 92 TG----RAFFTKSG 101
>AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform b protein.
Length = 504
Score = 27.5 bits (58), Expect = 5.9
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +2
Query: 32 AFFF*VVYLRKSSYKM--RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLG 205
AFF V L KS + R+ +VH QI +C CL +G++P G P +
Sbjct: 52 AFFRRTVALTKSFKCITGRDDCNVHYSMH--QICRSCRHKKCLSNGMKPGGVQPKKPNIE 109
Query: 206 GGDDSFNTFFSETG 247
G FF+++G
Sbjct: 110 TG----RAFFTKSG 119
>AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform a protein.
Length = 486
Score = 27.5 bits (58), Expect = 5.9
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +2
Query: 32 AFFF*VVYLRKSSYKM--RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLG 205
AFF V L KS + R+ +VH QI +C CL +G++P G P +
Sbjct: 34 AFFRRTVALTKSFKCITGRDDCNVHYSMH--QICRSCRHKKCLSNGMKPGGVQPKKPNIE 91
Query: 206 GGDDSFNTFFSETG 247
G FF+++G
Sbjct: 92 TG----RAFFTKSG 101
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,371,565
Number of Sequences: 27780
Number of extensions: 264262
Number of successful extensions: 803
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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