Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00058
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.0  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   3.2  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   3.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.2  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 229 VLQRDRRGKHVPRAVFVDLEPTVVDEVRTGTYRQL 333
           VL+  R   H+    + D+EPTV         RQL
Sbjct: 233 VLEERRAQSHLEAHCYFDIEPTVQQHQPVTVNRQL 267


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -3

Query: 167 GFHARGSTAPSRRCQSVRRLDRCERRCIPSFC 72
           GF   G      +C S     RC+ RC   FC
Sbjct: 24  GFGGFGGLGGRGKCPSNEIFSRCDGRC-QRFC 54


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -3

Query: 167 GFHARGSTAPSRRCQSVRRLDRCERRCIPSFC 72
           GF   G      +C S     RC+ RC   FC
Sbjct: 24  GFGGFGGLGGRGKCPSNEIFSRCDGRC-QRFC 54


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 469 LQGFLVFHSFGGG 507
           L+G ++ HS+GGG
Sbjct: 656 LRGSIIDHSYGGG 668


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 469 LQGFLVFHSFGGG 507
           L+G ++ HS+GGG
Sbjct: 694 LRGSIIDHSYGGG 706


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,487
Number of Sequences: 438
Number of extensions: 3437
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)