Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00058
(508 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 171 3e-43
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 171 3e-43
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 171 3e-43
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 171 3e-43
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 170 5e-43
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 170 5e-43
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 163 5e-41
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 110 5e-25
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 109 1e-24
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 108 2e-24
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 107 4e-24
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 107 4e-24
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 107 6e-24
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 105 2e-23
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 105 2e-23
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 103 9e-23
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 68 3e-12
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 68 4e-12
At5g16590.1 68418.m01942 leucine-rich repeat transmembrane prote... 29 2.4
At5g42280.1 68418.m05146 DC1 domain-containing protein contains ... 28 3.1
At4g19860.1 68417.m02910 lecithin:cholesterol acyltransferase fa... 28 3.1
At5g20980.1 68418.m02494 5-methyltetrahydropteroyltriglutamate--... 27 5.5
At4g37190.1 68417.m05265 expressed protein 27 5.5
At5g45120.1 68418.m05539 aspartyl protease family protein contai... 27 7.3
At5g19310.1 68418.m02301 homeotic gene regulator, putative simil... 27 7.3
At4g22980.1 68417.m03316 expressed protein ; expression supporte... 27 7.3
At1g24530.1 68414.m03088 transducin family protein / WD-40 repea... 27 9.6
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 171 bits (415), Expect = 3e-43
Identities = 77/86 (89%), Positives = 83/86 (96%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
GKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVD+
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLC 118
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LDRIRKLAD CTGLQGFLVF++ GGG
Sbjct: 119 LDRIRKLADNCTGLQGFLVFNAVGGG 144
Score = 130 bits (315), Expect = 4e-31
Identities = 53/59 (89%), Positives = 58/59 (98%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
MRECIS+HIGQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGAG
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAG 59
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 171 bits (415), Expect = 3e-43
Identities = 77/86 (89%), Positives = 83/86 (96%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
GKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVD+
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLC 118
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LDRIRKLAD CTGLQGFLVF++ GGG
Sbjct: 119 LDRIRKLADNCTGLQGFLVFNAVGGG 144
Score = 130 bits (315), Expect = 4e-31
Identities = 53/59 (89%), Positives = 58/59 (98%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
MRECIS+HIGQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGAG
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAG 59
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 171 bits (415), Expect = 3e-43
Identities = 77/86 (89%), Positives = 83/86 (96%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
GKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVD+
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLC 118
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LDRIRKLAD CTGLQGFLVF++ GGG
Sbjct: 119 LDRIRKLADNCTGLQGFLVFNAVGGG 144
Score = 132 bits (319), Expect = 1e-31
Identities = 54/59 (91%), Positives = 59/59 (100%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
MRECIS+HIGQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+FNTFFSETGAG
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAG 59
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 171 bits (415), Expect = 3e-43
Identities = 77/86 (89%), Positives = 83/86 (96%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
GKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVD+
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLC 118
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LDRIRKLAD CTGLQGFLVF++ GGG
Sbjct: 119 LDRIRKLADNCTGLQGFLVFNAVGGG 144
Score = 132 bits (319), Expect = 1e-31
Identities = 54/59 (91%), Positives = 59/59 (100%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
MRECIS+HIGQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+FNTFFSETGAG
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAG 59
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 170 bits (413), Expect = 5e-43
Identities = 75/86 (87%), Positives = 83/86 (96%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
GKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYT+GKEIVD+
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLC 118
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LDR+RKLAD CTGLQGFLVF++ GGG
Sbjct: 119 LDRVRKLADNCTGLQGFLVFNAVGGG 144
Score = 113 bits (273), Expect = 5e-26
Identities = 47/59 (79%), Positives = 53/59 (89%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
MRE IS+HIGQAG+Q+GN+CWELYCLEHGIQPDG MPSD T+G D+FNTFFSETGAG
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAG 59
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 170 bits (413), Expect = 5e-43
Identities = 75/86 (87%), Positives = 83/86 (96%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
GKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYT+GKEIVD+
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLC 118
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LDR+RKLAD CTGLQGFLVF++ GGG
Sbjct: 119 LDRVRKLADNCTGLQGFLVFNAVGGG 144
Score = 113 bits (273), Expect = 5e-26
Identities = 47/59 (79%), Positives = 53/59 (89%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
MRE IS+HIGQAG+Q+GN+CWELYCLEHGIQPDG MPSD T+G D+FNTFFSETGAG
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAG 59
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 163 bits (397), Expect = 5e-41
Identities = 71/86 (82%), Positives = 82/86 (95%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
G+HVPRAVF+DLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYT+G+EIVD
Sbjct: 59 GQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTC 118
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
L+R+RKLAD CTGLQGFLVF++ GGG
Sbjct: 119 LERLRKLADNCTGLQGFLVFNAVGGG 144
Score = 110 bits (264), Expect = 6e-25
Identities = 45/59 (76%), Positives = 52/59 (88%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
MRE IS+HIGQAG+Q+GN+CWELYCLEHGIQPDG MPSD T+G D+FNTFFSET +G
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSG 59
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 110 bits (265), Expect = 5e-25
Identities = 47/86 (54%), Positives = 62/86 (72%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
G++VPRA+ +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 57 GRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAV 116
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LD +RK A+ C LQGF V HS GGG
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHSLGGG 142
Score = 46.0 bits (104), Expect = 1e-05
Identities = 22/59 (37%), Positives = 32/59 (54%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
MRE + + GQ G QIG+ WE+ C EHGI P G+ + L + N +++E G
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDL--QLERVNVYYNEASCG 57
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 109 bits (261), Expect = 1e-24
Identities = 46/86 (53%), Positives = 62/86 (72%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
G++VPRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 58 GRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAV 117
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LD +RK A+ C LQGF V HS GGG
Sbjct: 118 LDVVRKEAENCDCLQGFQVCHSLGGG 143
Score = 46.0 bits (104), Expect = 1e-05
Identities = 22/59 (37%), Positives = 32/59 (54%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
MRE + V GQ G QIG+ WE+ C EHG+ P G+ D + + N +++E G
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGD-SADLQLERINVYYNEASGG 58
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 108 bits (260), Expect = 2e-24
Identities = 47/86 (54%), Positives = 62/86 (72%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
G++VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 57 GRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LD +RK A+ C LQGF V HS GGG
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHSLGGG 142
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
MRE + + GQ G QIG+ WE+ LEHGI G+ D L + N +++E G
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSEL--QLERVNVYYNEASCG 57
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 107 bits (257), Expect = 4e-24
Identities = 47/86 (54%), Positives = 61/86 (70%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
G+ VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 57 GRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LD +RK A+ C LQGF V HS GGG
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHSLGGG 142
Score = 43.6 bits (98), Expect = 8e-05
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
MRE + + GQ G QIG WE+ C EHGI G+ + L + N +++E G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDL--QLERVNVYYNEASCG 57
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 107 bits (257), Expect = 4e-24
Identities = 45/86 (52%), Positives = 62/86 (72%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
G++VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 58 GRYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAV 117
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LD +RK A+ C LQGF V HS GGG
Sbjct: 118 LDVVRKEAENCDCLQGFQVCHSLGGG 143
Score = 44.8 bits (101), Expect = 3e-05
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
MRE + + GQ G QIG+ WE+ C EHGI G+ D T + N +++E G
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGD-TADLQLERINVYYNEASGG 58
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 107 bits (256), Expect = 6e-24
Identities = 46/86 (53%), Positives = 62/86 (72%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
GK+VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 57 GKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LD +RK A+ C LQGF V HS GGG
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHSLGGG 142
Score = 46.0 bits (104), Expect = 1e-05
Identities = 24/59 (40%), Positives = 30/59 (50%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
MRE + + GQ G QIG WE+ C EHGI GQ D L + N +F+E G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDL--QLERINVYFNEASGG 57
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 105 bits (251), Expect = 2e-23
Identities = 46/86 (53%), Positives = 60/86 (69%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
G+ VPRAV +DLEP +D +R+G Y Q F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 57 GRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LD +RK A+ C LQGF V HS GGG
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHSLGGG 142
Score = 48.8 bits (111), Expect = 2e-06
Identities = 23/59 (38%), Positives = 31/59 (52%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
MRE + + GQ G QIG WE+ C EHGI P G+ D L + N +++E G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDL--QLERINVYYNEASCG 57
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 105 bits (251), Expect = 2e-23
Identities = 46/86 (53%), Positives = 60/86 (69%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
G+ VPRAV +DLEP +D +R+G Y Q F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 57 GRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LD +RK A+ C LQGF V HS GGG
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHSLGGG 142
Score = 48.8 bits (111), Expect = 2e-06
Identities = 23/59 (38%), Positives = 31/59 (52%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
MRE + + GQ G QIG WE+ C EHGI P G+ D L + N +++E G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDL--QLERINVYYNEASCG 57
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 103 bits (246), Expect = 9e-23
Identities = 45/86 (52%), Positives = 61/86 (70%)
Frame = +1
Query: 250 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVV 429
GK+VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 57 GKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
LD +RK A+ LQGF V HS GGG
Sbjct: 117 LDVVRKEAENSDCLQGFQVCHSLGGG 142
Score = 44.4 bits (100), Expect = 4e-05
Identities = 23/59 (38%), Positives = 30/59 (50%)
Frame = +2
Query: 77 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 253
MRE + + GQ G QIG WE+ C EHGI GQ D L + + +F+E G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPL--QLERIDVYFNEASGG 57
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 68.1 bits (159), Expect = 3e-12
Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDVV 429
++PRA+ +DLEP V++ ++ G YR L++ E + A NN+A G++ GK + + +
Sbjct: 60 YIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASGYHQ-GKGVEEEI 118
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
+D I + AD L+GF++ HS GG
Sbjct: 119 MDMIDREADGSDSLEGFVLCHSIAGG 144
Score = 48.0 bits (109), Expect = 4e-06
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +2
Query: 80 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFF 235
RE I++ +GQ G QIG W+ CLEHGI DG + T GG D + FF
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFF 52
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 67.7 bits (158), Expect = 4e-12
Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDVV 429
++PRA+ +DLEP V++ ++ G YR L++ E + A NN+A G++ GK + + +
Sbjct: 60 YIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASGYHQ-GKGVEEEI 118
Query: 430 LDRIRKLADQCTGLQGFLVFHSFGGG 507
+D I + AD L+GF++ HS GG
Sbjct: 119 MDMIDREADGSDSLEGFVLCHSIAGG 144
Score = 48.0 bits (109), Expect = 4e-06
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +2
Query: 80 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFF 235
RE I++ +GQ G QIG W+ CLEHGI DG + T GG D + FF
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFF 52
>At5g16590.1 68418.m01942 leucine-rich repeat transmembrane protein
kinase, putative
Length = 625
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 285 QINKDSSWHVLPAPVSLKNVLKESSPPPRVLSDGI*PSG 169
Q+ + S P P S V KES+ PP V+++G +G
Sbjct: 276 QVVQSRSIEAAPVPTSSAAVAKESNGPPAVVANGASENG 314
>At5g42280.1 68418.m05146 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 694
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -1
Query: 508 FHLRTSETRGNPEALCIGPPAS*SCPKLRLRSPCQWYSVLGHSYWQHP 365
F L S ++GN P S S PK RL P Q + + Y HP
Sbjct: 27 FRLGCSSSKGNDMEDTPPPFFSTSKPKCRLSDPAQPHKLCRRGYRSHP 74
>At4g19860.1 68417.m02910 lecithin:cholesterol acyltransferase
family protein / LACT family protein similar to
lysosomal phospholipase A2 [Mus musculus] GI:18699602;
contains Pfam profile PF02450: Lecithin:cholesterol
acyltransferase (phosphatidylcholine-sterol
acyltransferase)
Length = 535
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -2
Query: 348 LLGVEQLTVSAGTNLVDYSWFQINKDSSWHVLPAPVSLKNVLKESSPPPRV 196
L +E T S N DY I+ +W ++ K VL + PP+V
Sbjct: 297 LESLEVFTKSLSNNTADYCGESIDLPFNWKIMEWAHKTKQVLASAKLPPKV 347
>At5g20980.1 68418.m02494
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase, putative / vitamin-B12-independent
methionine synthase, putative / cobalamin-independent
methionine synthase, putative strong similarity to
SP|O50008
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent
methionine synthase isozyme) (Cobalamin-independent
methionine synthase isozyme) {Arabidopsis thaliana};
contains Pfam profile PF01717: Methionine synthase,
vitamin-B12 independent
Length = 812
Score = 27.5 bits (58), Expect = 5.5
Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
Frame = +2
Query: 56 LRKSSYKMRECISVHIGQAGVQ-IGNACWELYC-LEHGIQPDGQMPSDKTLGGGDDSFNT 229
L+ + +R+ I H+ AG++ I + + Y + G +PS G+ F+
Sbjct: 82 LQNVAANLRKSIWKHMAHAGIKYIPSNTFSYYDQMLDTTAMLGAVPSRYGWESGEIGFDV 141
Query: 230 FFSETGAGSTCHELSLLIWNQL*STRFVPAL--TVNCSTPSSSSLAKRMLPITMPEDTIP 403
+FS ++ H + + W VP L VN S S ++ + + DT+P
Sbjct: 142 YFSMARGNASAHAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVVEFKEAKALGIDTVP 201
Query: 404 L 406
+
Sbjct: 202 V 202
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 27.5 bits (58), Expect = 5.5
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Frame = +1
Query: 334 FHPEQLITGKEDAANNYARGHYTIGKEIV------DVVLDRIRKLADQCTGLQG--FLVF 489
+HP+ L ++ A +Y IGK++ + + DR+R ++C +QG FLV
Sbjct: 160 YHPQSLYELNGLWMDSQAFNNYGIGKDVFSEASRGEEICDRLRFFVEECDHIQGIKFLVD 219
Query: 490 HSFG 501
S G
Sbjct: 220 DSGG 223
>At5g45120.1 68418.m05539 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 491
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -3
Query: 497 NE*NTRKP*SPVHWSASFLILSKTTSTISLP 405
N+ R+ +P S+SFL+L+ T S++SLP
Sbjct: 22 NKTQARQHKNPSSSSSSFLVLTLTKSSVSLP 52
>At5g19310.1 68418.m02301 homeotic gene regulator, putative similar
to SP|P25439 Homeotic gene regulator (Brahma protein)
{Drosophila melanogaster}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1064
Score = 27.1 bits (57), Expect = 7.3
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +2
Query: 113 GVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGSTCHELSLLIWNQ 292
G I N+ EL+ L + + P ++ ++ FNT F+E G+ S E LLI N+
Sbjct: 543 GTPIQNSLQELWSLLNFLLPH----IFNSIHNFEEWFNTPFAECGSASLTDEEELLIINR 598
Query: 293 L 295
L
Sbjct: 599 L 599
>At4g22980.1 68417.m03316 expressed protein ; expression supported
by MPSS
Length = 559
Score = 27.1 bits (57), Expect = 7.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 297 YSWFQINKDSSWHVL 253
YSW + ++S WHVL
Sbjct: 267 YSWMSLARESEWHVL 281
>At1g24530.1 68414.m03088 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 7 WD-40 repeats (PF00400)
Length = 418
Score = 26.6 bits (56), Expect = 9.6
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 242 TGAGSTCHELSLLIWNQL*STRFVPA--LTVNCSTPSSSSLAKRMLPIT 382
TG+ S LSL + S + +P+ +TV+ S SS L +R LP+T
Sbjct: 39 TGSSSLHSSLSLQTLPSVPSLQKIPSTTVTVSHSVTSSFKLRERSLPVT 87
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,843,624
Number of Sequences: 28952
Number of extensions: 254043
Number of successful extensions: 789
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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