Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00057
         (757 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   4.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   4.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.1  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   9.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 16/42 (38%), Positives = 17/42 (40%)
 Frame = -3

Query: 362 LPPSLTTSKCQCFMSACTVASSNLRPMRRLASNIVLWGSSPP 237
           LPP         FMS CTV    +  M     NIVL  S  P
Sbjct: 298 LPPVSYLKAVDAFMSVCTVFVF-MALMEYCLVNIVLGDSDTP 338


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 399 FVFTLICYLDLRFASITDNLEMPVLHVGLHSSI 301
           F+  L C LD+++    + ++MP L V    S+
Sbjct: 282 FILHLFCLLDVQWRIPFNGIQMPNLMVFYEKSL 314


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +3

Query: 507 VFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYG 614
           V    Q +A K A  +   N   II+EPT     YG
Sbjct: 348 VLRHVQAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 753 HLPSGCRRRWISPRRYHP 700
           H P+G  + WI+  RY P
Sbjct: 794 HTPNGIVKTWIAHDRYLP 811


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 68 PFCIFNQSCYLFLKQ 24
          P+C  N SCY  LK+
Sbjct: 9  PYCRRNFSCYYSLKR 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,401
Number of Sequences: 438
Number of extensions: 5619
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)