Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00056
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   143   2e-35
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    29   0.79 
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    28   1.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.8  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    26   7.4  
SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr...    25   9.8  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  143 bits (347), Expect = 2e-35
 Identities = 60/84 (71%), Positives = 74/84 (88%)
 Frame = +1

Query: 511 TAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAP 690
           TAIRGAII+ KLS++P+RRGYWG  +G PHTVP KV+GKCGSVTVRL+PAPRG G+V+AP
Sbjct: 122 TAIRGAIIMGKLSIMPIRRGYWGTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAP 181

Query: 691 VPKKLLQMAGVQDCYTSARGSTGT 762
           V K+ LQ+AG++DCYT +RGST T
Sbjct: 182 VTKRFLQLAGIEDCYTQSRGSTKT 205



 Score =  140 bits (338), Expect = 3e-34
 Identities = 62/84 (73%), Positives = 77/84 (91%)
 Frame = +2

Query: 257 TKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTR 436
           TKLGRLV+ GKI  +E IYL+SLPIKE++I+D+FL P LNDEV+K++PVQKQTRAGQRTR
Sbjct: 38  TKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTR 96

Query: 437 FKAFVAIGDNNGHIGLGVKCSKEV 508
           FKAFV IGD++GH+GLG+KC+KEV
Sbjct: 97  FKAFVVIGDSDGHVGLGIKCAKEV 120


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +2

Query: 698 RSFFRWLVYRTATPQLVVQL 757
           RS F+WL+  TATP+L+V L
Sbjct: 69  RSVFQWLIALTATPRLLVLL 88


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
 Frame = -3

Query: 303 SSLSIFPSRTRRP--SLVKEPTLSGLPCRAHDHGRDHDRVHEDRRGLYLHRVIRIRR--E 136
           SS  ++P  T +   SLV EP  + L    H+H +D++R + +   L    V+R+R    
Sbjct: 333 SSELLYPEGTEQQIISLVDEPNQNALWIIEHEHSQDNNRSNIEL--LKDGSVVRLRHVMT 390

Query: 135 NRHVHRLEQRP 103
            R +H  E +P
Sbjct: 391 GRALHSHEHKP 401


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 225 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 100
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 591 KATHRPLQGHRQVWFCNSPADSCPSWYWN 677
           +A    L G  +   C   + SCPS++WN
Sbjct: 153 RADRAKLDGLYECILCACCSTSCPSYWWN 181


>SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 213 HGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPPFWN 91
           H R + R++E +      RVI+ +      + + + PPFWN
Sbjct: 83  HSRSNSRIYEAKP----KRVIKPKIAIIECNEMAENPPFWN 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,381,053
Number of Sequences: 5004
Number of extensions: 71583
Number of successful extensions: 204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)