Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00056
(818 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0756 + 5819367-5820038,5820847-5821005 157 1e-38
03_06_0386 + 33555682-33556344,33557138-33557299 155 4e-38
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 79 3e-15
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 42 4e-04
05_03_0348 - 12792940-12793335 31 1.1
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 30 2.5
09_06_0201 - 21545189-21545494,21545593-21545743,21545835-215460... 28 7.8
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 157 bits (380), Expect = 1e-38
Identities = 70/84 (83%), Positives = 80/84 (95%)
Frame = +1
Query: 511 TAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAP 690
TAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A
Sbjct: 135 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAH 194
Query: 691 VPKKLLQMAGVQDCYTSARGSTGT 762
VPKK+LQ AG++D +TS+RGST T
Sbjct: 195 VPKKVLQFAGIEDVFTSSRGSTKT 218
Score = 128 bits (308), Expect = 7e-30
Identities = 59/84 (70%), Positives = 71/84 (84%)
Frame = +2
Query: 257 TKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTR 436
TKLGRLV+E KI K+E IYL SLP+KE +I++ + P L DEV+KI PVQKQTRAGQRTR
Sbjct: 51 TKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQKQTRAGQRTR 109
Query: 437 FKAFVAIGDNNGHIGLGVKCSKEV 508
FKAFV +GD +GH+GLGVKC+KEV
Sbjct: 110 FKAFVVVGDGDGHVGLGVKCAKEV 133
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 155 bits (376), Expect = 4e-38
Identities = 69/84 (82%), Positives = 80/84 (95%)
Frame = +1
Query: 511 TAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAP 690
TAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A
Sbjct: 132 TAIRGAIILAKLSVVPVRRGYWGNKIGQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAR 191
Query: 691 VPKKLLQMAGVQDCYTSARGSTGT 762
VPKK+LQ AG++D +TS+RGST T
Sbjct: 192 VPKKVLQFAGIEDVFTSSRGSTKT 215
Score = 132 bits (320), Expect = 2e-31
Identities = 60/84 (71%), Positives = 72/84 (85%)
Frame = +2
Query: 257 TKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTR 436
TKLGRLV+EG+ K+E IYL SLP+KE +I++ + P L DEV+KI PVQKQTRAGQRTR
Sbjct: 48 TKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQKQTRAGQRTR 106
Query: 437 FKAFVAIGDNNGHIGLGVKCSKEV 508
FKAFV +GDNNGH+GLGVKC+KEV
Sbjct: 107 FKAFVVVGDNNGHVGLGVKCAKEV 130
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 79.4 bits (187), Expect = 3e-15
Identities = 45/100 (45%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Frame = +1
Query: 493 VQQGSPTAIRGAIILAKLSVLPVRRGYWGNKIG-KPHTVPCKVTGKCGSVTVRLIPAPRG 669
V+ T + GAIILA + G I KPHTV CKV K GSVTVR++ P G
Sbjct: 16 VKCAKATTMSGAIILA---MFRCAEGATRETISRKPHTVSCKVADKYGSVTVRMMLPPMG 72
Query: 670 TGIVSAPVPKKLLQMAGVQDCYTSARGSTGTWEILLKPHM 789
+ +V+ VPKK+L+ AG++D +TS+RGST T +K M
Sbjct: 73 SSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLSNFVKHQM 112
Score = 36.7 bits (81), Expect = 0.022
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 446 FVAIGDNNGHIGLGVKCSKEVPLPFEALLSLLSC 547
FV +GD + HI LGVKC+K + +L++ C
Sbjct: 2 FVVVGDGDSHIELGVKCAKATTMSGAIILAMFRC 35
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 42.3 bits (95), Expect = 4e-04
Identities = 17/45 (37%), Positives = 30/45 (66%)
Frame = +2
Query: 374 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 508
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEV 215
>05_03_0348 - 12792940-12793335
Length = 131
Score = 31.1 bits (67), Expect = 1.1
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Frame = +1
Query: 457 WRQQRSYWFGCEVQQGSPTAIRGAIILAK---LSVLPVRRGYWGNKIGKPHTVPCKVTGK 627
WR++R W G ++ SP+ R I K ++V P R W ++ P + T +
Sbjct: 7 WRKRRRCWRGGGKKEASPS--RRCRIQEKGKGVAVAPAWRPGWEERVP-----PSRATVR 59
Query: 628 CGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGS 753
+ + AP G G +AP KK A D RG+
Sbjct: 60 VRELGIEASTAPVGKGGGAAPFEKKPSLAASAVDGSARGRGA 101
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = -2
Query: 517 WQWD----FLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 392
W W+ F+A LHT +M V +E C LS F+ +HD
Sbjct: 648 WIWEIEEEFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>09_06_0201 -
21545189-21545494,21545593-21545743,21545835-21546072,
21546158-21546365,21546446-21546639,21546721-21546819,
21546886-21546922,21548242-21548775
Length = 588
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +2
Query: 413 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVPLPFEALLSLLSCLFYQFEEVTGVTRS 589
TRA R F ++ I DN G G + ++ LP A + + C+ + + ++ G R+
Sbjct: 172 TRASDRLDFNVWLCIFDNGG--GTAKSDAVKIVLPVLACILTVLCISFAWLKIKGKRRN 228
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,133,748
Number of Sequences: 37544
Number of extensions: 522924
Number of successful extensions: 1470
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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