Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00056
         (818 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)              169   3e-42
SB_12505| Best HMM Match : FHA (HMM E-Value=0.097)                     29   3.4  
SB_20635| Best HMM Match : rve (HMM E-Value=0.91)                      29   4.5  
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_52533| Best HMM Match : rve (HMM E-Value=2)                         29   4.5  
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)                  29   4.5  
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)                     29   4.5  
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             29   6.0  
SB_46063| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00015)         28   7.9  
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)                 28   7.9  
SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)                    28   7.9  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  169 bits (410), Expect = 3e-42
 Identities = 77/93 (82%), Positives = 82/93 (88%)
 Frame = +1

Query: 484 GCEVQQGSPTAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAP 663
           G +  +   TAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGS  VRLIPAP
Sbjct: 88  GVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSTRVRLIPAP 147

Query: 664 RGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGT 762
           RGTGIVSAPVPKKLLQMAG++DCYTS RG T T
Sbjct: 148 RGTGIVSAPVPKKLLQMAGIEDCYTSTRGQTAT 180



 Score =  152 bits (369), Expect = 3e-37
 Identities = 73/84 (86%), Positives = 78/84 (92%)
 Frame = +2

Query: 257 TKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTR 436
           TKLGRLV++ KI  LE IYLFSLPIKEFEIIDFFLG +L DEVLKIMPVQKQTRAGQRTR
Sbjct: 12  TKLGRLVKDLKIKTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTR 71

Query: 437 FKAFVAIGDNNGHIGLGVKCSKEV 508
           FKAFVAIGD+NGH+GLGVKCSKEV
Sbjct: 72  FKAFVAIGDSNGHVGLGVKCSKEV 95


>SB_12505| Best HMM Match : FHA (HMM E-Value=0.097)
          Length = 629

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +2

Query: 404 QKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVPLPFEALLSLLSCLFYQFEEVTGVT 583
           +KQT   Q+ R KA   +G +    G+GV+ +K   +   A  ++   L Y  +E + V 
Sbjct: 56  EKQTEKIQQERHKALEDMGISIQSSGIGVEKNKFYLVNLNADPAMNELLVYYLKEHSKVG 115

Query: 584 RSE-SHTPSL 610
           R + +HTP +
Sbjct: 116 RLDANHTPDI 125


>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
          Length = 748

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 374 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 487
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192


>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 374 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 487
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848


>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2211

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 374  NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 487
            N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045


>SB_52533| Best HMM Match : rve (HMM E-Value=2)
          Length = 212

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 374 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 487
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 95  NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132


>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
          Length = 212

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 374 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 487
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 9   NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46


>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
          Length = 735

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 374 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 487
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = +1

Query: 553  LPVRRGYWGNKIG--KPHTVPCKVTGKCGSVTVRLIPAPRGT 672
            LP   GYW N  G   P   PC V   C +   +  P P GT
Sbjct: 3355 LPCPAGYWCNIKGLADPSISPCPVGHYCLNAIDKPTPCPNGT 3396


>SB_46063| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00015)
          Length = 798

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +1

Query: 700 KLLQMAGVQDCYTSARGSTGT--WEILLKPHMLPLPRHMP 813
           KL ++ G+          TGT  W +  +PH+LP P  +P
Sbjct: 307 KLKRLCGLTQTVKVLTRDTGTLDWVLTNRPHLLPSPAQLP 346


>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
          Length = 1130

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 424 TAHTFQGICCHWRQQRSYW 480
           TA  +  ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504


>SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 822

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 547 SVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 687
           +V    RG+W   + + H + C V  +CG +   L  AP    +VS+
Sbjct: 303 TVFTTYRGFWNYALVRKHWLKCVVNLQCG-IAKHLSQAPSNKLLVSS 348


>SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)
          Length = 1745

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 692  FLRSFFRWLVYRTATPQLVVQLAPGK 769
            F  SF RWL  R    Q   +LAPGK
Sbjct: 1605 FAESFHRWLAQRLFRAQYSRELAPGK 1630


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,501,858
Number of Sequences: 59808
Number of extensions: 591673
Number of successful extensions: 1586
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1585
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)