Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00056
(818 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 160 1e-39
Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical pr... 30 2.3
U40059-3|AAP68936.1| 280|Caenorhabditis elegans Forkhead transc... 29 3.0
U40059-2|AAA81139.2| 300|Caenorhabditis elegans Forkhead transc... 29 3.0
Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical pr... 29 5.3
AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical... 29 5.3
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 160 bits (388), Expect = 1e-39
Identities = 72/93 (77%), Positives = 81/93 (87%)
Frame = +1
Query: 484 GCEVQQGSPTAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAP 663
G + + TAIRGAI+ AKL+V+PVRRGYWGNKIG PHTVPCKVTGKC SV VRLIPAP
Sbjct: 136 GVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKIGLPHTVPCKVTGKCASVMVRLIPAP 195
Query: 664 RGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGT 762
RGTGIVSAPVPKKLL MAG++DCYT+A+GST T
Sbjct: 196 RGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTAT 228
Score = 129 bits (312), Expect = 2e-30
Identities = 67/84 (79%), Positives = 71/84 (84%)
Frame = +2
Query: 257 TKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTR 436
TKLGRLV+E KI LE IYL SLPIKEFEIID L +L DEVLKI PVQKQT AGQRTR
Sbjct: 61 TKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTR 119
Query: 437 FKAFVAIGDNNGHIGLGVKCSKEV 508
FKAFVAIGD+ GH+GLGVKCSKEV
Sbjct: 120 FKAFVAIGDHAGHVGLGVKCSKEV 143
>Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 625 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 756
+C + V PRG G+ P K+ + G++D Y GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258
>Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 625 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 756
+C + V PRG G+ P K+ + G++D Y GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258
>U40059-3|AAP68936.1| 280|Caenorhabditis elegans Forkhead
transcription factor familyprotein 9, isoform b protein.
Length = 280
Score = 29.5 bits (63), Expect = 3.0
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Frame = -3
Query: 549 RQLSKDNSASNGSGTSLLHFTPKPI*PLLSPMATNALKRVRCPARVCFCTGM-IFRTSSF 373
R LS+D+ S+GSG + +P P P +SP N + V+ + +GM ++ + F
Sbjct: 155 RTLSRDDRGSSGSGET----SPSPSQPSISPPNENPMPSVQALNVLELLSGMNDYKGTLF 210
Query: 372 RDGPRKKSMISNSLI-GKENK*MLSSLSIFP 283
++ R + NS + G +N + + I P
Sbjct: 211 QNNYRTNLIQDNSAVNGLQNLLTTTLMQINP 241
>U40059-2|AAA81139.2| 300|Caenorhabditis elegans Forkhead
transcription factor familyprotein 9, isoform a protein.
Length = 300
Score = 29.5 bits (63), Expect = 3.0
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Frame = -3
Query: 549 RQLSKDNSASNGSGTSLLHFTPKPI*PLLSPMATNALKRVRCPARVCFCTGM-IFRTSSF 373
R LS+D+ S+GSG + +P P P +SP N + V+ + +GM ++ + F
Sbjct: 175 RTLSRDDRGSSGSGET----SPSPSQPSISPPNENPMPSVQALNVLELLSGMNDYKGTLF 230
Query: 372 RDGPRKKSMISNSLI-GKENK*MLSSLSIFP 283
++ R + NS + G +N + + I P
Sbjct: 231 QNNYRTNLIQDNSAVNGLQNLLTTTLMQINP 261
>Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 435 RVRCPARVCFCTGMIFRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 259
R R P + T R+SS R P S +S + + + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581
>Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical
protein C30F2.3 protein.
Length = 403
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 570 TSSNW*NRQLSKDNSASNGSG 508
TS+NW N QL NS + GSG
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG 329
>AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 435 RVRCPARVCFCTGMIFRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 259
R R P + T R+SS R P S +S + + + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,142,253
Number of Sequences: 27780
Number of extensions: 422645
Number of successful extensions: 1284
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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