Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00056
         (818 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.5  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    24   1.5  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    24   1.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   1.5  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.6  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   5.9  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   7.8  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 286 KNRQTREHLLVFFT 327
           KN QTREH L+ FT
Sbjct: 129 KNGQTREHALLAFT 142


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 286 KNRQTREHLLVFFT 327
           KN QTREH L+ FT
Sbjct: 56  KNGQTREHALLAFT 69


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 286 KNRQTREHLLVFFT 327
           KN QTREH L+ FT
Sbjct: 72  KNGQTREHALLAFT 85


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 286 KNRQTREHLLVFFT 327
           KN QTREH L+ FT
Sbjct: 129 KNGQTREHALLAFT 142


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 99  FWNL*FILLIITKLWTIYTKNSYLS 25
           FW   F +L + K+W  YT   +L+
Sbjct: 180 FWVTPFTVLPLLKVWGRYTTEGFLT 204


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 99  FWNL*FILLIITKLWTIYTKNSYLS 25
           FW   F +L + K+W  YT   +L+
Sbjct: 180 FWVTPFTVLPLLKVWGRYTTEGFLT 204


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
 Frame = +1

Query: 232 KTRKSGFLHQT-----RPSCSRRKNRQTRE 306
           + R  GF H +       SCSR +NR+ RE
Sbjct: 218 RNRTHGFQHTSSRYSRERSCSRDRNREYRE 247


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 610 CKVTGKCGSVTVRLIPAPRGT 672
           C + G CG +   +   P+GT
Sbjct: 75  CPICGACGDIAHTVKYCPKGT 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,046
Number of Sequences: 438
Number of extensions: 4995
Number of successful extensions: 22
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)