Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00055
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    28   1.7  
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    25   8.9  
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    25   8.9  

>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 352 PPGKRIYLFDFYYMYHHNLES 414
           PP   IYLF  + ++H+ LES
Sbjct: 585 PPNNVIYLFSLHIIFHNELES 605


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = -2

Query: 256 RVKHRMHATST*KKYLCSDF*LFILIPTHSLAFLICFKTNASQFILATNSVLIRFMNIKL 77
           R+ + M   +T   +  + F  FI++   SL   +  +      +LA+ +  ++   I+L
Sbjct: 310 RISYMMGIETT--NFFATGFSFFIILLFFSLLVAMASRFIVEMVLLASRNQALKKQRIRL 367

Query: 76  Y----SKFFFYLAI 47
           Y    SK FFY  I
Sbjct: 368 YWKSISKGFFYRVI 381


>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 151 CFKTNASQFILATNSVLIRFMNIKLYSK 68
           C +TN + F+L+TN   I+    KLY K
Sbjct: 98  CKRTNRAHFLLSTNDKTIKLW--KLYEK 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,974,602
Number of Sequences: 5004
Number of extensions: 59729
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)