Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00055
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0255 + 2684534-2684601,2684662-2684772,2684853-2684934,268...    29   5.3  
08_02_0800 + 21330446-21330722,21331040-21331182,21331925-213319...    29   5.3  
09_06_0143 - 21122872-21123154,21124112-21124173                       28   7.0  
12_02_0330 - 17612867-17613161,17613376-17613459,17613554-176137...    28   9.3  

>10_01_0255 +
           2684534-2684601,2684662-2684772,2684853-2684934,
           2685004-2685088,2685195-2685358
          Length = 169

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 201 SEHRYFFYVEVACMRCFTL*LL*RMSHHCKSLGVIASQQKQ 323
           S H+   YV+  C RCF L     M  H  S+G    +QK+
Sbjct: 95  SNHQALTYVDTTCARCFKL-----MGDHVNSMGSKPVRQKK 130


>08_02_0800 +
           21330446-21330722,21331040-21331182,21331925-21331978,
           21332065-21332130,21333075-21333096,21333347-21333460,
           21334153-21334278,21334891-21334925,21335709-21335809,
           21335911-21335971,21336482-21336572,21337657-21337842,
           21338755-21338922,21339006-21339208,21339313-21339431,
           21339910-21339928,21340092-21340130,21340238-21340465,
           21340987-21341088,21341842-21341889,21343622-21343765,
           21343873-21343968,21344224-21344325,21345188-21345274
          Length = 876

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 450 KPNYNAFSYYAISSPITRN*IY-RVIGGVTVF 542
           KPNYN   YYA   P+ ++ +  R I G   F
Sbjct: 738 KPNYNLVMYYAAERPVNKDSLLGRFIDGTDAF 769


>09_06_0143 - 21122872-21123154,21124112-21124173
          Length = 114

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 66  NFEYNLIFMKRIKTEFVAKIN*LAFVLKHIKNASECVGIKINNQKSEHRYF 218
           ++EY L+F KRI   F++K    ++  ++ K A   +     N+ S+  Y+
Sbjct: 36  DYEYQLVFQKRIIRIFISKYYNQSY--EYFKEAGRIIKPDFGNEYSKKSYY 84


>12_02_0330 -
           17612867-17613161,17613376-17613459,17613554-17613744,
           17614085-17614995,17615081-17615252,17615337-17615412,
           17615515-17615634,17615841-17616005,17616096-17616186,
           17616644-17616785,17616848-17617042,17617132-17617185,
           17617299-17617397,17618181-17618296,17618376-17618442
          Length = 925

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 202 LSIDIFFMLKWRACDVSLFNYCNECPIIV 288
           +S  +F   K+  C V + +YC  CP++V
Sbjct: 876 ISCPLFVFDKFWVCFVEVLSYCMICPVVV 904


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,839,387
Number of Sequences: 37544
Number of extensions: 297012
Number of successful extensions: 408
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)