Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00054
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce... 53 3e-08
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 44 2e-05
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 28 1.3
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos... 26 4.1
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 26 4.1
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 26 4.1
SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces po... 26 5.4
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 26 5.4
SPAC27D7.04 |omt2||4-alpha-hydroxytetrahydrobiopterin dehydratas... 25 7.2
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 7.2
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 25 9.5
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 9.5
SPAC1782.11 |met14||adenylyl-sulfate kinase |Schizosaccharomyces... 25 9.5
>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 851
Score = 53.2 bits (122), Expect = 3e-08
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Frame = +3
Query: 255 AVYCVIGCCDVSDEHY-EVARTADDYLWLKLSFIRT---RSANETESFSYSDLQKLILEE 422
AVY +IG CD+S + +DY+W +L R +S + E FS D+Q ++L
Sbjct: 403 AVYKIIGRCDLSKTSCPSICSVTEDYIWFQLILSREFTEKSVSAHEFFSLEDVQHILLS- 461
Query: 423 YGETHY-HAYEKPVVYFQVLALTGQFEPAMN 512
YG ++ + PV+YF +L L G +E A+N
Sbjct: 462 YGSDYFTNNGSNPVMYFFLLMLCGLYERAIN 492
Score = 35.1 bits (77), Expect = 0.009
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Frame = +1
Query: 25 VIDERPLWPMVYYCLRSGDPNAALHCLRKAGRD-----HEEFIAALEEYIRNPEKPLSDK 189
+I + P+W ++Y LR G A+ + RD E+F + Y + P L +
Sbjct: 320 IIQDVPIWAFIFYLLRCGFLKEAVD-FTEENRDLFEKVAEKFPFYINAYAKAPNGILPRQ 378
Query: 190 LQTAI--NFQYRIQVRNSTDPYK 252
L++ + F I+++ S+DPYK
Sbjct: 379 LRSQLFSEFNQTIRLQESSDPYK 401
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 44.0 bits (99), Expect = 2e-05
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Frame = +1
Query: 16 TDGVIDERPLWPMVYYCLRSGDPNAALHCLRKAGRDHEE----FIAALEEYIRNPEKPLS 183
T V+++ PLW +++Y +RSG +AAL + D E+ F Y +NP PL
Sbjct: 383 TVSVVNDVPLWVVLFYLMRSGQLDAALQFVNTYSDDFEKLGRSFPLYFYSYAKNPSLPLP 442
Query: 184 DKLQTAINFQY-RIQVRNSTDPYK 252
+L+ + +Y ++ DP+K
Sbjct: 443 KQLRDRLQAEYGQLMKYAPEDPFK 466
Score = 40.3 bits (90), Expect = 2e-04
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Frame = +3
Query: 255 AVYCVIGCCDVSDEHY-EVARTADDYLWLKLSFIRTRSANETES---------FSYSDLQ 404
A+Y ++G C+ EV T++DY+W++L F R + +S F+ L+
Sbjct: 468 AIYKLLGNCEPHRVSLPEVCVTSEDYMWIQLMFCRVNQNDVIDSNGGQSTNSLFNLYQLE 527
Query: 405 KLILEEYGETHYHAYEK-PVVYFQVLALTGQFEPAMNSSREYQDIKYTVFIWLLRY 569
K I+ +G +++ P YF L + G+FE A++ ++ T F + Y
Sbjct: 528 KKIV-AFGPRYFNPKNNTPTNYFLALLMCGEFERAISFLHTNYPVEATHFAVAMAY 582
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 585 WAHRGMFKLHSCLWTQKIH 641
W HR MF LHS + K+H
Sbjct: 164 WTHRAMFILHSMVILMKLH 182
>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 453 KPVVYFQVLALTGQFEPAMNSSREYQDIKYTVFIWLL 563
+P++ V+ L G F + + DI TVF WLL
Sbjct: 401 RPLIAMVVVLLFGFFAYINEADKNGSDISDTVFDWLL 437
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 527 VFSRGIHSWLKLSSQSQHLKVHDRFFIS 444
+F+ +H WL SSQ+ L HD F +S
Sbjct: 132 IFNHFLHKWLHESSQTGFL--HDHFSVS 157
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +3
Query: 498 EPAMNSSREYQDIKYTVFIWLLRYMTFTCWAHRGMFKLHSCLWTQKIH 641
+P EY + +Y + + YM +T HRG+ + T+ IH
Sbjct: 59 QPRHGFEEEYNNAEYINMLEQVFYMYYTDKRHRGVISKKNAEPTETIH 106
>SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -2
Query: 563 QEP-YEHRVLDILVFSRGIHSWLKLSSQSQHLK 468
+EP Y + +L +LV S I L+LSS S HL+
Sbjct: 247 KEPLYLNTLLALLVESNNIQEALELSSNSTHLQ 279
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +3
Query: 111 SWA*S*RIHSCFRRVYPKP*KTTKRQTADSHKFPIQNTSSEFYRSL*K 254
SW + SC R Y P K TK+ T S + + + +F + K
Sbjct: 21 SWFNNSLFSSCLLRFYSNPPKKTKKNTLISLRKSAETANEKFIEKINK 68
>SPAC27D7.04 |omt2||4-alpha-hydroxytetrahydrobiopterin dehydratase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 96
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 60 VNHGPEWAFIYDSISETL 7
+NH PEW +Y+ + TL
Sbjct: 53 LNHHPEWTNVYNKVDITL 70
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/34 (29%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 381 SFSYSDLQKLILEEYGETHYHA-YEKPVVYFQVL 479
S+ ++LQK+I+ ++GE +EK +++ +L
Sbjct: 2767 SWGMTELQKVIVTDFGEFEVSVIFEKQIIFTDIL 2800
>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 526
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 477 TLESTRPVFHKHDNAFHHI 421
TL S + +H + NA+HHI
Sbjct: 352 TLLSVKEYYHYYRNAYHHI 370
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -2
Query: 608 LEHSSVCPACKRHV 567
++ S CP CKRHV
Sbjct: 51 MDQSLTCPICKRHV 64
>SPAC1782.11 |met14||adenylyl-sulfate kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 374 FVGTARPYEGEFQPEVVV 321
F G + PYE PE+VV
Sbjct: 158 FTGISAPYEAPISPEIVV 175
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,780,791
Number of Sequences: 5004
Number of extensions: 56451
Number of successful extensions: 160
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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