Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00054
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0995 - 13071930-13072007,13072708-13072999,13073096-130732...    31   0.80 
11_01_0243 + 1872229-1872446,1872745-1872842,1872991-1873073,187...    30   1.8  
01_05_0134 - 18456233-18457572,18457636-18457863,18458134-18458293     29   2.4  
03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,449...    28   5.6  

>03_02_0995 -
           13071930-13072007,13072708-13072999,13073096-13073226,
           13073564-13074466,13074545-13074631,13075141-13075224,
           13075355-13075408,13075903-13076034,13076164-13076259,
           13076508-13076777,13078711-13078800,13079942-13080008,
           13080150-13080241,13080359-13080487
          Length = 834

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
 Frame = +3

Query: 315 TADDYLWLKLSFIR--TRSANETES------FSYSDLQKLILEEYGETHYHAYEK-PVVY 467
           T +D+LW KLS +R  T +++   S      ++  DLQ   L ++  ++Y    K P+VY
Sbjct: 436 TIEDFLWFKLSALREYTSASSSNVSNEGLVPYTLEDLQS-YLNKFEPSYYTKNGKDPLVY 494

Query: 468 FQVLALTGQFEPAM 509
             VL L+ Q  PA+
Sbjct: 495 PYVLLLSIQLLPAI 508


>11_01_0243 +
           1872229-1872446,1872745-1872842,1872991-1873073,
           1873163-1873289,1873623-1873686,1873802-1873899,
           1873981-1874065,1874179-1874302,1874608-1874709,
           1874821-1874934,1875325-1875389,1875891-1875972,
           1876069-1876152
          Length = 447

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 221 ILYWKFMAVCSLSLSGFSGFRIYSSKAA 138
           +LY KF+ VC  S S F GF+++    A
Sbjct: 335 LLYRKFLPVCFRSTSSFQGFKLFPELTA 362


>01_05_0134 - 18456233-18457572,18457636-18457863,18458134-18458293
          Length = 575

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 267 VIGCCDVSDEHYEVARTADDYLWLKLSFIRTRSANETESF 386
           V GCC +SDE      T   Y+WL  +FI+        SF
Sbjct: 161 VFGCCLLSDE------TVSSYVWLLETFIKAMGGKHPRSF 194


>03_01_0611 +
           4493618-4493641,4494705-4494730,4495758-4497471,
           4498179-4499263,4499351-4500296
          Length = 1264

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 533 ILVFSRGIHSWLKLSSQSQHLKVHD 459
           +LVF+RG+ + L   SQ  ++K+HD
Sbjct: 904 VLVFARGVPTSLSGGSQDCYIKIHD 928


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,935,200
Number of Sequences: 37544
Number of extensions: 349095
Number of successful extensions: 921
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)