Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00054
         (651 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D42085-1|BAA07680.2|  832|Homo sapiens KIAA0095 protein.               90   7e-18
BC034346-1|AAH34346.1|  819|Homo sapiens nucleoporin 93kDa protein.    90   7e-18

>D42085-1|BAA07680.2|  832|Homo sapiens KIAA0095 protein.
          Length = 832

 Score = 89.8 bits (213), Expect = 7e-18
 Identities = 42/89 (47%), Positives = 60/89 (67%), Gaps = 3/89 (3%)
 Frame = +3

Query: 252 KAVYCVIGCCDVSDEHYEVARTADDYLWLKLS---FIRTRSANETESFSYSDLQKLILEE 422
           +AVYC+IG CDV+D   EVA   +DYLWLKL+   F    +++  +  + S  QK +LE+
Sbjct: 401 RAVYCIIGRCDVTDNQSEVADKTEDYLWLKLNQVCFDDDGTSSPQDRLTLSQFQKQLLED 460

Query: 423 YGETHYHAYEKPVVYFQVLALTGQFEPAM 509
           YGE+H+   ++P +YFQVL LT QFE A+
Sbjct: 461 YGESHFTVNQQPFLYFQVLFLTAQFEAAV 489



 Score = 71.3 bits (167), Expect = 3e-12
 Identities = 30/82 (36%), Positives = 47/82 (57%)
 Frame = +1

Query: 10  GFTDGVIDERPLWPMVYYCLRSGDPNAALHCLRKAGRDHEEFIAALEEYIRNPEKPLSDK 189
           G  DG ++  P+W ++YYC+R GD  AA   + +A     EF    +EY+ + ++ LS  
Sbjct: 320 GLQDGEVEGHPVWALIYYCMRCGDLLAASQVVNRAQHQLGEFKTWFQEYMNSKDRRLSPA 379

Query: 190 LQTAINFQYRIQVRNSTDPYKR 255
            +  +   YR  +RN+TDPYKR
Sbjct: 380 TENKLRLHYRRALRNNTDPYKR 401



 Score = 37.1 bits (82), Expect = 0.054
 Identities = 20/50 (40%), Positives = 28/50 (56%)
 Frame = +2

Query: 500 ASYEFLSRIPRYQVHGVHMALALHDVYMLGTPRNVQAPLLSVDTEDPPPL 649
           A+  FL R+ R + H VH+AL L ++ +L       A LLS +  DPP L
Sbjct: 487 AAVAFLFRMERLRCHAVHVALVLFELKLLLKSSGQSAQLLSHEPGDPPCL 536


>BC034346-1|AAH34346.1|  819|Homo sapiens nucleoporin 93kDa protein.
          Length = 819

 Score = 89.8 bits (213), Expect = 7e-18
 Identities = 42/89 (47%), Positives = 60/89 (67%), Gaps = 3/89 (3%)
 Frame = +3

Query: 252 KAVYCVIGCCDVSDEHYEVARTADDYLWLKLS---FIRTRSANETESFSYSDLQKLILEE 422
           +AVYC+IG CDV+D   EVA   +DYLWLKL+   F    +++  +  + S  QK +LE+
Sbjct: 388 RAVYCIIGRCDVTDNQSEVADKTEDYLWLKLNQVCFDDDGTSSPQDRLTLSQFQKQLLED 447

Query: 423 YGETHYHAYEKPVVYFQVLALTGQFEPAM 509
           YGE+H+   ++P +YFQVL LT QFE A+
Sbjct: 448 YGESHFTVNQQPFLYFQVLFLTAQFEAAV 476



 Score = 71.3 bits (167), Expect = 3e-12
 Identities = 30/82 (36%), Positives = 47/82 (57%)
 Frame = +1

Query: 10  GFTDGVIDERPLWPMVYYCLRSGDPNAALHCLRKAGRDHEEFIAALEEYIRNPEKPLSDK 189
           G  DG ++  P+W ++YYC+R GD  AA   + +A     EF    +EY+ + ++ LS  
Sbjct: 307 GLQDGEVEGHPVWALIYYCMRCGDLLAASQVVNRAQHQLGEFKTWFQEYMNSKDRRLSPA 366

Query: 190 LQTAINFQYRIQVRNSTDPYKR 255
            +  +   YR  +RN+TDPYKR
Sbjct: 367 TENKLRLHYRRALRNNTDPYKR 388



 Score = 37.5 bits (83), Expect = 0.041
 Identities = 20/50 (40%), Positives = 29/50 (58%)
 Frame = +2

Query: 500 ASYEFLSRIPRYQVHGVHMALALHDVYMLGTPRNVQAPLLSVDTEDPPPL 649
           A+  FL R+ R + H VH+AL L ++ +L      +A LLS +  DPP L
Sbjct: 474 AAVAFLFRMERLRCHAVHVALVLFELKLLLKSSGQRAQLLSHEPGDPPCL 523


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,283,124
Number of Sequences: 237096
Number of extensions: 2010935
Number of successful extensions: 4432
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4430
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)