Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00054
(651 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-14|AAM81101.1| 392|Caenorhabditis elegans Nuclear pore... 41 9e-04
AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore... 41 9e-04
U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily ass... 30 1.6
U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily ass... 30 1.6
Z22181-4|CAA80182.1| 824|Caenorhabditis elegans Hypothetical pr... 29 3.8
U64848-8|ABS83847.1| 408|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z75543-11|CAA99876.1| 277|Caenorhabditis elegans Hypothetical p... 27 8.7
AY728064-1|AAU43725.1| 277|Caenorhabditis elegans cadmium-induc... 27 8.7
AL132951-1|CAC44310.2| 707|Caenorhabditis elegans Hypothetical ... 27 8.7
>AC087079-14|AAM81101.1| 392|Caenorhabditis elegans Nuclear pore
complex protein protein13, isoform b protein.
Length = 392
Score = 40.7 bits (91), Expect = 9e-04
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +1
Query: 19 DGVIDERPLWPMVYYCLRSGDPNAALHCLR--KAGRDHEEFIAALEEYIRNPEKPLSDKL 192
D ID P W + Y+C+R+GD +A L K+ +AAL ++ + L +L
Sbjct: 290 DDSIDGMPTWQVTYHCVRAGDMKSASETLNRLKSFPQCATLVAALNHVAKHGK--LDSEL 347
Query: 193 QTAINFQYRIQVRNSTDPYKR 255
+ + ++R + ++ D YKR
Sbjct: 348 KKKLKVEWRHNLAHTKDKYKR 368
>AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore
complex protein protein13, isoform a protein.
Length = 787
Score = 40.7 bits (91), Expect = 9e-04
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +1
Query: 19 DGVIDERPLWPMVYYCLRSGDPNAALHCLR--KAGRDHEEFIAALEEYIRNPEKPLSDKL 192
D ID P W + Y+C+R+GD +A L K+ +AAL ++ + L +L
Sbjct: 290 DDSIDGMPTWQVTYHCVRAGDMKSASETLNRLKSFPQCATLVAALNHVAKHGK--LDSEL 347
Query: 193 QTAINFQYRIQVRNSTDPYKR 255
+ + ++R + ++ D YKR
Sbjct: 348 KKKLKVEWRHNLAHTKDKYKR 368
>U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily
assigned gene nameprotein 279, isoform a protein.
Length = 1020
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 641 VDLLCPQTGVELEHSSVCPACKRHVTQEP 555
VD CP+T +++ S P+C T+EP
Sbjct: 291 VDDYCPRTSIDIGLDSSAPSCSSDATREP 319
>U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily
assigned gene nameprotein 279, isoform b protein.
Length = 1061
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 641 VDLLCPQTGVELEHSSVCPACKRHVTQEP 555
VD CP+T +++ S P+C T+EP
Sbjct: 332 VDDYCPRTSIDIGLDSSAPSCSSDATREP 360
>Z22181-4|CAA80182.1| 824|Caenorhabditis elegans Hypothetical
protein ZK632.5 protein.
Length = 824
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 402 QKLILEEYGETHYHAYEKPVVYFQVLALTGQFEPAMNSSR 521
QKL++ GE Y Y KP+V + L PA+ + +
Sbjct: 110 QKLMVRIDGEYKYRLYSKPIVRNNIPQLAWDISPALRTRK 149
>U64848-8|ABS83847.1| 408|Caenorhabditis elegans Hypothetical
protein C50E3.16 protein.
Length = 408
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +3
Query: 390 YSDLQKLILEEYGETHYHAYEKPVVYFQVLALTGQFEPAMNSSREYQDIKYTVFIW 557
YSD KL E + Y Y+ P+V L A++S YQ I YT +W
Sbjct: 189 YSDYLKLFFVELHQNLYTIYKNPLV------LKWSIWSALSSCIFYQIINYTQTLW 238
>Z75543-11|CAA99876.1| 277|Caenorhabditis elegans Hypothetical
protein K01D12.11 protein.
Length = 277
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +3
Query: 306 VARTADDYLWLKLSFIRTRSANETESFSYSDLQKL--ILEEYGETHYHAYEKPVVYFQVL 479
++R AD++L+ L IR +SA+++ + DL L L A+ K +Y++ +
Sbjct: 133 LSRMADNHLFYIL--IRYKSASDSLYNIFGDLFNLPSFLVPVVIPVVRAFFKRKIYYRCV 190
Query: 480 ALTGQFEPAMNSSREYQDIK 539
G FEP ++D+K
Sbjct: 191 GAIGDFEPQELDELLHRDLK 210
>AY728064-1|AAU43725.1| 277|Caenorhabditis elegans
cadmium-inducible lysosomal proteinCDR-4 protein.
Length = 277
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +3
Query: 306 VARTADDYLWLKLSFIRTRSANETESFSYSDLQKL--ILEEYGETHYHAYEKPVVYFQVL 479
++R AD++L+ L IR +SA+++ + DL L L A+ K +Y++ +
Sbjct: 133 LSRMADNHLFYIL--IRYKSASDSLYNIFGDLFNLPSFLVPVVIPVVRAFFKRKIYYRCV 190
Query: 480 ALTGQFEPAMNSSREYQDIK 539
G FEP ++D+K
Sbjct: 191 GAIGDFEPQELDELLHRDLK 210
>AL132951-1|CAC44310.2| 707|Caenorhabditis elegans Hypothetical
protein Y67H2A.1 protein.
Length = 707
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 408 LILEEYGETHYHAYEKPVVYFQVLA 482
LIL+EY E+H ++ PV Y LA
Sbjct: 252 LILDEYWESHQELHDIPVYYASSLA 276
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,386,245
Number of Sequences: 27780
Number of extensions: 310539
Number of successful extensions: 856
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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