Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00054
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41620.1 68415.m05143 nucleoporin interacting component famil...    36   0.031
At3g57350.1 68416.m06384 nucleoporin interacting component-relat...    35   0.054
At4g34120.1 68417.m04840 CBS domain-containing protein contains ...    30   1.2  
At5g15940.1 68418.m01864 short-chain dehydrogenase/reductase (SD...    29   2.7  
At1g16270.1 68414.m01948 protein kinase family protein contains ...    29   3.5  
At5g04070.1 68418.m00389 short-chain dehydrogenase/reductase (SD...    27   8.2  

>At2g41620.1 68415.m05143 nucleoporin interacting component family
           protein contains Pfam profile PF04097: Nucleoporin
           interacting component
          Length = 861

 Score = 35.5 bits (78), Expect = 0.031
 Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
 Frame = +3

Query: 315 TADDYLWLKLSFIRTRSANETE--------SFSYSDLQKLILEEYGETHYHAYEK-PVVY 467
           T +D+LW KLS IR  +   +          +S  DLQ   L ++  ++Y    K P+VY
Sbjct: 446 TIEDFLWFKLSCIRDVTGGSSSVVLNDGLAPYSLDDLQ-AYLNKFEPSYYTKNGKDPLVY 504

Query: 468 FQVLALTGQFEPA-MNSSREYQDIKYTV 548
             VL L+ Q  PA M+ S+E  D  Y +
Sbjct: 505 PYVLLLSVQLLPAIMHLSKEAGDGGYNI 532



 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 46  WPMVYYCLRSGDPNAALHCLRKAGRDHEEFIAALEEYI 159
           W  +Y+CLR+G    A    R   R  ++F   L E+I
Sbjct: 346 WQQIYFCLRTGYYEEAREIARST-RSSQQFAPLLTEWI 382


>At3g57350.1 68416.m06384 nucleoporin interacting component-related
           contains weak hit to Pfam profile PF04097: Nucleoporin
           interacting component
          Length = 875

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 10/88 (11%)
 Frame = +3

Query: 315 TADDYLWLKLSFIRTRSANETE--------SFSYSDLQKLILEEYGETHYHAYEK-PVVY 467
           T +D+LW KLS +R  +   +          +S  DLQ   L ++  ++Y    K P+VY
Sbjct: 447 TIEDFLWFKLSCVRDVAGGSSSMIVNDGLVPYSLDDLQ-AYLNKFEPSYYTKNGKDPLVY 505

Query: 468 FQVLALTGQFEPA-MNSSREYQDIKYTV 548
             VL L+ Q  PA M+ S E  D  Y +
Sbjct: 506 PYVLLLSIQLLPAIMHMSNEAGDEGYNI 533


>At4g34120.1 68417.m04840 CBS domain-containing protein contains
           Pfam profile PF00571: CBS domain
          Length = 238

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
 Frame = +3

Query: 285 VSDEHYEVARTADDYLWLKLSFIRTRSANETESF--------SYSDLQKLILEEYGE 431
           V D+++ +     DY  L L  I  RS N+T  F        ++++LQKLI + YG+
Sbjct: 115 VIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGK 171


>At5g15940.1 68418.m01864 short-chain dehydrogenase/reductase (SDR)
           family protein similar to forever young oxidoreductase
           GI:18138083 from [Lycopersicon esculentum]
          Length = 346

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -2

Query: 611 ELEHSSVCPACKRHVTQEP----YEHRVLDILVFSRGIHSWLKLSSQSQHLKV 465
           +L+  SV   C     Q P    YE+  L +L+FS  +H  L+L   S H+ V
Sbjct: 194 KLDKDSVTGVCFSTSNQYPCARIYEYSKLCLLLFSYELHRQLRLIDDSSHVSV 246


>At1g16270.1 68414.m01948 protein kinase family protein contains
           PF|00069 Eukaryotic protein kinase domain. ESTs
           gb|H37741, gb|T43005 and gb|AI100340 come from this gene
          Length = 1147

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 378 ESFSYSDLQKLILEEYGETHYHAYEKPVVYFQVLALTGQFEPAMNSSREYQDIK 539
           +  S+ +L++ +LE Y  TH   Y+ P      L      E  +N   EY +++
Sbjct: 198 KDISWQELRQKVLEIYYRTHVVKYQLPGEDLDALVSVSCDEDLLNMMEEYNEME 251


>At5g04070.1 68418.m00389 short-chain dehydrogenase/reductase (SDR)
           family protein contains INTERPRO family IPR002198
           Short-chain dehydrogenase/reductase (SDR) superfamily
          Length = 359

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = -2

Query: 620 TGVELEHSSVCPACKRHVTQEPYEHRVLDILVFSRGIHSWLKLSSQSQHLKV 465
           TGV    S   P C R      YE+  L +L+FS  +H  L L   S H+ V
Sbjct: 218 TGVNFSRSKQYP-CARI-----YEYSKLCLLLFSYELHRQLHLMDDSHHISV 263


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,514,717
Number of Sequences: 28952
Number of extensions: 288994
Number of successful extensions: 788
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)