Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00052
         (470 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin pr...    77   1e-16
AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    77   1e-16
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...    77   1e-16
AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin pr...    65   4e-13
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    26   0.20 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    24   0.81 
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    24   0.81 
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    24   0.81 
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    24   0.81 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    24   0.81 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   1.9  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   4.3  

>AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin
           protein.
          Length = 76

 Score = 76.6 bits (180), Expect = 1e-16
 Identities = 35/36 (97%), Positives = 36/36 (100%)
 Frame = +2

Query: 2   GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
           GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 35  GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70


>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score = 76.6 bits (180), Expect = 1e-16
 Identities = 35/36 (97%), Positives = 36/36 (100%)
 Frame = +2

Query: 2   GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
           GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 35  GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70



 Score = 76.6 bits (180), Expect = 1e-16
 Identities = 35/36 (97%), Positives = 36/36 (100%)
 Frame = +2

Query: 2   GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
           GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 111 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146



 Score = 76.6 bits (180), Expect = 1e-16
 Identities = 35/36 (97%), Positives = 36/36 (100%)
 Frame = +2

Query: 2   GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
           GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 187 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222



 Score = 76.6 bits (180), Expect = 1e-16
 Identities = 35/36 (97%), Positives = 36/36 (100%)
 Frame = +2

Query: 2   GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
           GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 263 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298



 Score = 76.6 bits (180), Expect = 1e-16
 Identities = 35/36 (97%), Positives = 36/36 (100%)
 Frame = +2

Query: 2   GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
           GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 339 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374



 Score = 76.6 bits (180), Expect = 1e-16
 Identities = 35/36 (97%), Positives = 36/36 (100%)
 Frame = +2

Query: 2   GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
           GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 491 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 526



 Score = 76.6 bits (180), Expect = 1e-16
 Identities = 35/36 (97%), Positives = 36/36 (100%)
 Frame = +2

Query: 2   GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
           GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 567 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 602



 Score = 76.6 bits (180), Expect = 1e-16
 Identities = 35/36 (97%), Positives = 36/36 (100%)
 Frame = +2

Query: 2   GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
           GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 643 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 678



 Score = 74.1 bits (174), Expect = 6e-16
 Identities = 34/36 (94%), Positives = 35/36 (97%)
 Frame = +2

Query: 2   GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
           GIPP+QQR IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 415 GIPPDQQRSIFAGKQLEDGRTLSDYNIQKESTLHLV 450


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score = 76.6 bits (180), Expect = 1e-16
 Identities = 35/36 (97%), Positives = 36/36 (100%)
 Frame = +2

Query: 2   GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
           GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 7   GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 42



 Score = 62.5 bits (145), Expect = 2e-12
 Identities = 28/30 (93%), Positives = 29/30 (96%)
 Frame = +2

Query: 2   GIPPNQQRLIFAGKQLEDGRTLSDYNIQKE 91
           GIPP+QQR IFAGKQLEDGRTLSDYNIQKE
Sbjct: 83  GIPPDQQRSIFAGKQLEDGRTLSDYNIQKE 112


>AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin
           protein.
          Length = 64

 Score = 64.9 bits (151), Expect = 4e-13
 Identities = 29/30 (96%), Positives = 30/30 (100%)
 Frame = +2

Query: 2   GIPPNQQRLIFAGKQLEDGRTLSDYNIQKE 91
           GIPP+QQRLIFAGKQLEDGRTLSDYNIQKE
Sbjct: 35  GIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 25.8 bits (54), Expect = 0.20
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -3

Query: 468 FFFFFLSSDTVSRFYLKSIIHSSRERSYRLEGTYLFVVVFEDHRAVTLPAVVTVL 304
           FFFF +  D ++   + +I+H  R+R    + + + +VV      +  PAV+ V+
Sbjct: 75  FFFFAICCDFIALIVV-NIVHVFRKRRVNYKDSNIGLVVANAFFLLWTPAVIFVV 128


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 0.81
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 381 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 295
           L GTY   ++F    +V L  VV   HHR
Sbjct: 273 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 301


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 0.81
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 381 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 295
           L GTY   ++F    +V L  VV   HHR
Sbjct: 273 LIGTYFNCIMFMVASSVVLTVVVLNYHHR 301


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 0.81
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 381 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 295
           L GTY   ++F    +V L  VV   HHR
Sbjct: 273 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 301


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 0.81
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 381 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 295
           L GTY   ++F    +V L  VV   HHR
Sbjct: 273 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 301


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 0.81
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 381 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 295
           L GTY   ++F    +V L  VV   HHR
Sbjct: 273 LIGTYFNCIMFMVASSVVLTVVVLNYHHR 301


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -1

Query: 125 HHEASTPGGGWIPSGYCSPR 66
           HH    P GG  P G   PR
Sbjct: 63  HHYGGPPSGGQPPQGMPYPR 82


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 97  GGFLLDIVVREGTSIFQLLSS 35
           GGFLL  VV+ G ++   LSS
Sbjct: 108 GGFLLCKVVKYGQTLGPYLSS 128


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,100
Number of Sequences: 336
Number of extensions: 1821
Number of successful extensions: 25
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10931752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)