Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00052
(470 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 100 1e-22
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 100 1e-22
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 77 2e-15
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 77 2e-15
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 77 2e-15
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 48 5e-07
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 36 0.004
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 27 1.9
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 27 1.9
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 25 5.8
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 100 bits (240), Expect = 1e-22
Identities = 49/84 (58%), Positives = 57/84 (67%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXXNYSTPXXXXXX 181
GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV Y+TP
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKTYTTPKKIKHK 94
Query: 182 XXXXXLAVLRFYKVDENGKIHRLR 253
LAVL++YKV+++G + RLR
Sbjct: 95 HKKVELAVLKYYKVEDDGSVKRLR 118
Score = 37.9 bits (84), Expect = 8e-04
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 274 CGAGVFMAVMEDRHYCGKCHSTM 342
CGA FMA +DR YCG+CH T+
Sbjct: 124 CGASTFMANHKDRLYCGRCHLTL 146
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 100 bits (240), Expect = 1e-22
Identities = 49/84 (58%), Positives = 57/84 (67%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXXNYSTPXXXXXX 181
GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV Y+TP
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKTYTTPKKIKHK 94
Query: 182 XXXXXLAVLRFYKVDENGKIHRLR 253
LAVL++YKV+++G + RLR
Sbjct: 95 HKKVELAVLKYYKVEDDGSVKRLR 118
Score = 37.9 bits (84), Expect = 8e-04
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 274 CGAGVFMAVMEDRHYCGKCHSTM 342
CGA FMA +DR YCG+CH T+
Sbjct: 124 CGASTFMANHKDRLYCGRCHLTL 146
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 76.6 bits (180), Expect = 2e-15
Identities = 35/36 (97%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 76.6 bits (180), Expect = 2e-15
Identities = 35/36 (97%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 76.6 bits (180), Expect = 2e-15
Identities = 35/36 (97%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 76.6 bits (180), Expect = 2e-15
Identities = 35/36 (97%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 111 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 76.6 bits (180), Expect = 2e-15
Identities = 35/36 (97%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 187 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 76.6 bits (180), Expect = 2e-15
Identities = 35/36 (97%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 263 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 76.6 bits (180), Expect = 2e-15
Identities = 35/36 (97%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 339 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 48.4 bits (110), Expect = 5e-07
Identities = 20/36 (55%), Positives = 27/36 (75%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLI+AGKQ+ D + Y+++ S LHLV
Sbjct: 35 GIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLV 70
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 35.5 bits (78), Expect = 0.004
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +2
Query: 5 IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
I +QRLI+AG+ L+D +L Y IQ ++HLV
Sbjct: 39 IEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLV 73
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 26.6 bits (56), Expect = 1.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 89 PSGYCSPRGYVHLPAAFQQRSTSVDWEGF 3
PS + PRG V+ P+ ++R + + GF
Sbjct: 17 PSSFLKPRGLVYRPSQIRRRVSLLSLSGF 45
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 26.6 bits (56), Expect = 1.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 405 SSRERSYRLEGTYLFVVVFEDHRAVTLPAV 316
+S + SY L TYL F++HR + AV
Sbjct: 149 NSHQNSYSLNETYLSYDFFDNHRGASSSAV 178
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.0 bits (52), Expect = 5.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 11 PNQQRLIFAGKQLEDGRTLSDYNI 82
PNQ AGK+L+ R L DY+I
Sbjct: 476 PNQGDTRKAGKRLKYSRNLDDYHI 499
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,729,234
Number of Sequences: 5004
Number of extensions: 28821
Number of successful extensions: 79
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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