Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00052
(470 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 110 5e-25
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 1e-14
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0) 77 1e-14
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0) 77 1e-14
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037) 74 5e-14
SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29) 63 1e-10
SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10) 34 0.052
SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05) 32 0.21
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 32 0.21
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 30 1.1
SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 28 3.4
SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11) 28 3.4
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_48816| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_46138| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 110 bits (265), Expect = 5e-25
Identities = 56/91 (61%), Positives = 61/91 (67%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXXNYSTPXXXXXX 181
GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV NY+TP
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYTTPKKIKHK 94
Query: 182 XXXXXLAVLRFYKVDENGKIHRLRPSAQASS 274
LAVL++YKVDENGKI RLR + S
Sbjct: 95 KKKVKLAVLKYYKVDENGKITRLRRECPSES 125
Score = 48.8 bits (111), Expect = 2e-06
Identities = 21/31 (67%), Positives = 21/31 (67%)
Frame = +1
Query: 256 ECTGEQCGAGVFMAVMEDRHYCGKCHSTMVF 348
EC E CGAGVFMA DR YCGKC T VF
Sbjct: 120 ECPSESCGAGVFMASHFDRQYCGKCCLTYVF 150
>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 76.6 bits (180), Expect = 1e-14
Identities = 35/36 (97%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 76.6 bits (180), Expect = 1e-14
Identities = 35/36 (97%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 111 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 76.6 bits (180), Expect = 1e-14
Identities = 35/36 (97%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 187 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 76.6 bits (180), Expect = 1e-14
Identities = 35/36 (97%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 263 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 76.6 bits (180), Expect = 1e-14
Identities = 35/36 (97%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 339 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
Score = 76.6 bits (180), Expect = 1e-14
Identities = 35/36 (97%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 415 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 450
Score = 76.6 bits (180), Expect = 1e-14
Identities = 35/36 (97%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 491 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 526
>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 381
Score = 76.6 bits (180), Expect = 1e-14
Identities = 35/36 (97%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 76.6 bits (180), Expect = 1e-14
Identities = 35/36 (97%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 111 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 76.6 bits (180), Expect = 1e-14
Identities = 35/36 (97%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 187 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 76.6 bits (180), Expect = 1e-14
Identities = 35/36 (97%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 263 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 76.6 bits (180), Expect = 1e-14
Identities = 35/36 (97%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 339 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 147
Score = 76.6 bits (180), Expect = 1e-14
Identities = 35/36 (97%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 45.2 bits (102), Expect = 3e-05
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 106
GIPP QRL++ ++L D R+L+DYNI++ S LHL
Sbjct: 110 GIPPKVQRLLYEEEELVDNRSLADYNIKQGSILHL 144
>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
Length = 150
Score = 74.1 bits (174), Expect = 5e-14
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = +2
Query: 5 IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
IPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 2 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 36
>SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)
Length = 142
Score = 62.9 bits (146), Expect = 1e-10
Identities = 28/29 (96%), Positives = 29/29 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQK 88
GIPP+QQRLIFAGKQLEDGRTLSDYNIQK
Sbjct: 113 GIPPDQQRLIFAGKQLEDGRTLSDYNIQK 141
>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
Length = 333
Score = 34.3 bits (75), Expect = 0.052
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
G P +QQRL+F G+ L D T I +TLHL+
Sbjct: 106 GYPKDQQRLVFNGQVLSDEDTFEKVGIFAGATLHLI 141
>SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05)
Length = 198
Score = 32.3 bits (70), Expect = 0.21
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYN 79
GIP +QRLIF GK L+D + L +++
Sbjct: 21 GIPAERQRLIFKGKVLQDEKKLKEFD 46
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 32.3 bits (70), Expect = 0.21
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYN 79
GIP +QRLIF GK L+D + L +++
Sbjct: 1 GIPAERQRLIFKGKVLQDEKKLKEFD 26
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 8 PPNQQRLIFAGKQLEDGRTLSDYNIQKES 94
P +LI+AGK L D L +YNI ++S
Sbjct: 106 PHGNIKLIYAGKILNDDNPLKEYNIDEKS 134
>SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 1240
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +2
Query: 335 ARWSSKTTTNK*VPSSL*ERSRLLCMMDFK*NLDTVSELKK 457
AR S+TTT+ P L E SR C+ + NLD KK
Sbjct: 1079 ARLVSRTTTHFSTPQKLKEASRSYCVENILKNLDIQEFFKK 1119
>SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11)
Length = 744
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQK 88
GIP + QRL F K+L D TL+ N+++
Sbjct: 41 GIPGDIQRLHFMNKELYDDATLAKVNLKQ 69
>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 27.5 bits (58), Expect = 5.9
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -3
Query: 321 AVVTVLHHRHEH 286
A++TV+HHRH H
Sbjct: 525 AIITVIHHRHHH 536
>SB_48816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 27.5 bits (58), Expect = 5.9
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 184 EEGQTSRP-QVLQGRRER*DPPSAAECTGEQCGAGVFMAVMEDRHYC 321
EE +T RP Q L+ D P C+G AGV + DR+ C
Sbjct: 62 EEARTDRPSQQLRSLNGEWDAP----CSGALSAAGVVVTAQRDRYTC 104
>SB_46138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1106
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 305 SITAMNTPAPHCSPVHSAADGGSYRSRRP 219
S+ +N PA C PVH++ G Y R P
Sbjct: 449 SLLNLNLPAKVCLPVHTSRVGSHYVVRIP 477
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,402,963
Number of Sequences: 59808
Number of extensions: 246390
Number of successful extensions: 680
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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