Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00052
(470 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23410.1 68414.m02932 ubiquitin extension protein, putative /... 102 1e-22
At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / ... 100 6e-22
At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / ... 99 8e-22
At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to polyu... 75 2e-14
At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677 75 2e-14
At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to GI:92... 75 2e-14
At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to GI:92... 75 2e-14
At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3) senescence... 75 2e-14
At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3) senescence... 75 2e-14
At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3) senescence... 75 2e-14
At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3) senescence... 75 2e-14
At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3) senescence... 75 2e-14
At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to GI:3... 75 2e-14
At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to GI:1... 75 2e-14
At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to GI:1... 75 2e-14
At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to GI:1... 75 2e-14
At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / ... 75 2e-14
At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / ... 75 2e-14
At2g35635.1 68415.m04370 ubiquitin family protein contains INTER... 75 2e-14
At1g65350.1 68414.m07413 polyubiquitin, putative similar to poly... 75 2e-14
At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to poly... 75 2e-14
At1g31340.1 68414.m03835 ubiquitin family protein contains INTER... 75 2e-14
At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to polyu... 71 4e-13
At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam ... 61 4e-10
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha... 46 1e-05
At5g42220.1 68418.m05139 ubiquitin family protein contains INTER... 44 4e-05
At2g17200.1 68415.m01986 ubiquitin family protein weak similarit... 44 7e-05
At2g17190.1 68415.m01985 ubiquitin family protein contains INTER... 43 9e-05
At5g11080.1 68418.m01294 ubiquitin family protein contains INTER... 37 0.008
At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative simi... 36 0.018
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 33 0.13
At1g53950.1 68414.m06145 ubiquitin family protein contains INTER... 31 0.30
At2g46500.2 68415.m05791 phosphatidylinositol 3- and 4-kinase fa... 31 0.52
At2g46500.1 68415.m05790 phosphatidylinositol 3- and 4-kinase fa... 31 0.52
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 31 0.52
At5g14360.1 68418.m01678 ubiquitin family protein contains INTER... 29 1.2
At4g03370.1 68417.m00459 ubiquitin family protein contains INTER... 29 1.2
At3g14130.1 68416.m01787 (S)-2-hydroxy-acid oxidase, peroxisomal... 29 1.6
At4g02970.1 68417.m00404 ubiquitin family protein contains INTER... 28 3.7
At3g14150.1 68416.m01789 (S)-2-hydroxy-acid oxidase, peroxisomal... 28 3.7
At4g03350.1 68417.m00457 ubiquitin family protein contains INTER... 27 4.8
At4g01000.1 68417.m00135 ubiquitin family protein low similarity... 27 4.8
At3g24480.1 68416.m03070 leucine-rich repeat family protein / ex... 27 4.8
At1g64900.1 68414.m07357 cytochrome P450, putative similar to cy... 27 4.8
At2g20130.1 68415.m02352 expressed protein contains Pfam domain,... 27 8.5
>At1g23410.1 68414.m02932 ubiquitin extension protein, putative /
40S ribosomal protein S27A (RPS27aA) strong similarity
to ubiquitin extension protein (UBQ5) GB:AAA32906
GI:166934 from (Arabidopsis thaliana)
Length = 156
Score = 102 bits (244), Expect = 1e-22
Identities = 51/94 (54%), Positives = 59/94 (62%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXXNYSTPXXXXXX 181
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV Y+ P
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHT 94
Query: 182 XXXXXLAVLRFYKVDENGKIHRLRPSAQASSAAP 283
LAVL+FYKVD +GK+ RL+ + S P
Sbjct: 95 HKKVKLAVLQFYKVDGSGKVQRLKKECPSVSCGP 128
Score = 50.8 bits (116), Expect = 5e-07
Identities = 21/36 (58%), Positives = 23/36 (63%)
Frame = +1
Query: 256 ECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDDDK 363
EC CG G FMA DRHYCGKC +T VFK D+
Sbjct: 120 ECPSVSCGPGTFMASHFDRHYCGKCGTTYVFKKADE 155
>At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / 40S
ribosomal protein S27A (RPS27aB) identical to GI:166936
Length = 157
Score = 100 bits (239), Expect = 6e-22
Identities = 50/84 (59%), Positives = 56/84 (66%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXXNYSTPXXXXXX 181
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV Y+ P
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK 94
Query: 182 XXXXXLAVLRFYKVDENGKIHRLR 253
LAVL+FYKVD +GK+ RLR
Sbjct: 95 HKKVKLAVLQFYKVDGSGKVQRLR 118
Score = 47.6 bits (108), Expect = 4e-06
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = +1
Query: 256 ECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDD 357
EC CGAG FMA DRHYCGKC T V++ +
Sbjct: 120 ECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKE 153
>At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / 40S
ribosomal protein S27A (RPS27aC) identical to GI:166933,
GI:166934
Length = 157
Score = 99 bits (238), Expect = 8e-22
Identities = 49/84 (58%), Positives = 56/84 (66%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXXNYSTPXXXXXX 181
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV Y+ P
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK 94
Query: 182 XXXXXLAVLRFYKVDENGKIHRLR 253
LAVL+FYK+D +GK+ RLR
Sbjct: 95 HKKVKLAVLQFYKIDGSGKVQRLR 118
Score = 47.6 bits (108), Expect = 4e-06
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = +1
Query: 256 ECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDD 357
EC CGAG FMA DRHYCGKC T V++ +
Sbjct: 120 ECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKE 153
>At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to
polyubiquitin (ubq9) gene sequence GI:304120 from
[Arabidopsis thaliana]
Length = 322
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 189 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 224
Score = 73.7 bits (173), Expect = 6e-14
Identities = 32/36 (88%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
G+PP+QQRLIFAGKQL+DGRTL+DYNIQKESTLHLV
Sbjct: 113 GVPPDQQRLIFAGKQLDDGRTLADYNIQKESTLHLV 148
Score = 60.9 bits (141), Expect = 4e-10
Identities = 30/36 (83%), Positives = 33/36 (91%), Gaps = 1/36 (2%)
Frame = +2
Query: 5 IPPNQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLV 109
I P+QQRLIFAG+QLEDG TL+DYNIQKESTLHLV
Sbjct: 266 IQPDQQRLIFAGEQLEDGYYTLADYNIQKESTLHLV 301
Score = 58.8 bits (136), Expect = 2e-09
Identities = 26/35 (74%), Positives = 32/35 (91%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 106
GIP +QQRLIF+GK L+DGRTL+DY+IQK+S LHL
Sbjct: 37 GIPLDQQRLIFSGKLLDDGRTLADYSIQKDSILHL 71
>At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677
Length = 382
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 111 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 187 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 263 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 339 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374
>At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 111 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 187 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 263 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
>At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 111 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 187 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 263 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
>At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 312
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 111 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 187 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 29.9 bits (64), Expect = 0.91
Identities = 18/32 (56%), Positives = 20/32 (62%)
Frame = +3
Query: 30 SLLESSWKMDVPSRTTISRRNPPSTWC*GFVV 125
S LESS +MDV TT SRR+ TW FVV
Sbjct: 272 SSLESSLRMDVLWPTTTSRRSLLFTWSCVFVV 303
>At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 111 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 187 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 263 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 339 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374
Score = 29.9 bits (64), Expect = 0.91
Identities = 18/32 (56%), Positives = 20/32 (62%)
Frame = +3
Query: 30 SLLESSWKMDVPSRTTISRRNPPSTWC*GFVV 125
S LESS +MDV TT SRR+ TW FVV
Sbjct: 424 SSLESSLRMDVLWPTTTSRRSLLFTWSCVFVV 455
>At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 111 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 187 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 263 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 29.9 bits (64), Expect = 0.91
Identities = 18/32 (56%), Positives = 20/32 (62%)
Frame = +3
Query: 30 SLLESSWKMDVPSRTTISRRNPPSTWC*GFVV 125
S LESS +MDV TT SRR+ TW FVV
Sbjct: 348 SSLESSLRMDVLWPTTTSRRSLLFTWSCVFVV 379
>At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 111 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 187 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 263 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 339 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374
Score = 29.9 bits (64), Expect = 0.91
Identities = 18/32 (56%), Positives = 20/32 (62%)
Frame = +3
Query: 30 SLLESSWKMDVPSRTTISRRNPPSTWC*GFVV 125
S LESS +MDV TT SRR+ TW FVV
Sbjct: 424 SSLESSLRMDVLWPTTTSRRSLLFTWSCVFVV 455
>At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 111 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 187 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 263 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 29.9 bits (64), Expect = 0.91
Identities = 18/32 (56%), Positives = 20/32 (62%)
Frame = +3
Query: 30 SLLESSWKMDVPSRTTISRRNPPSTWC*GFVV 125
S LESS +MDV TT SRR+ TW FVV
Sbjct: 348 SSLESSLRMDVLWPTTTSRRSLLFTWSCVFVV 379
>At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to
GI:304117
Length = 229
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 111 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 187 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
>At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 111 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 187 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 263 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
>At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 229
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 111 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 187 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
>At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 111 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 187 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 263 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
>At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / 60S
ribosomal protein L40 (RPL40B) identical to GI:166929,
GI:166930
Length = 128
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
>At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / 60S
ribosomal protein L40 (RPL40A) identical to GI:166930,
GI:166931
Length = 128
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
>At2g35635.1 68415.m04370 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 154
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 51.6 bits (118), Expect = 3e-07
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP QQRLI+AGKQL D +T DY I+ S LHLV
Sbjct: 111 GIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLV 146
>At1g65350.1 68414.m07413 polyubiquitin, putative similar to
polyubiquitin GI:248337 from [Zea mays]
Length = 294
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 72.9 bits (171), Expect = 1e-13
Identities = 33/35 (94%), Positives = 35/35 (100%)
Frame = +2
Query: 5 IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
IPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 187 IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 221
Score = 68.1 bits (159), Expect = 3e-12
Identities = 33/36 (91%), Positives = 35/36 (97%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+D NIQKESTLHLV
Sbjct: 111 GIPPDQQRLIFAGKQLEDGRTLAD-NIQKESTLHLV 145
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDG 58
GIPP+QQRLIFAGKQLE G
Sbjct: 262 GIPPDQQRLIFAGKQLEGG 280
>At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to
polyubiquitin (ubq12) gene sequence GI:304121 from
[Arabidopsis thaliana]
Length = 230
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 111 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 69.3 bits (162), Expect = 1e-12
Identities = 32/36 (88%), Positives = 34/36 (94%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GI P+QQRLIFAGKQ EDGRTL+DYNIQKESTLHLV
Sbjct: 187 GISPDQQRLIFAGKQHEDGRTLADYNIQKESTLHLV 222
Score = 68.9 bits (161), Expect = 2e-12
Identities = 29/36 (80%), Positives = 35/36 (97%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+Q RLIFAGKQLEDGRTL+DYN+Q++STLHL+
Sbjct: 35 GIPPDQHRLIFAGKQLEDGRTLADYNVQEDSTLHLL 70
>At1g31340.1 68414.m03835 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 156
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 54.8 bits (126), Expect = 3e-08
Identities = 25/36 (69%), Positives = 28/36 (77%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP QQRLI+AGKQL D +T DYNI+ S LHLV
Sbjct: 111 GIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLV 146
>At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to
polyubiquitin (ubq8) GI:870793, GB:L05917 [Arabidopsis
thaliana] (Genetics 139 (2), 921-939 (1995))
Length = 631
Score = 70.9 bits (166), Expect = 4e-13
Identities = 33/36 (91%), Positives = 34/36 (94%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GI P QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 113 GILPRQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 148
Score = 68.5 bits (160), Expect = 2e-12
Identities = 32/36 (88%), Positives = 34/36 (94%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIP +QQRLIFAGKQLEDG TL+DYNIQKESTLHLV
Sbjct: 37 GIPLDQQRLIFAGKQLEDGLTLADYNIQKESTLHLV 72
Score = 57.6 bits (133), Expect = 4e-09
Identities = 26/33 (78%), Positives = 30/33 (90%)
Frame = +2
Query: 11 PNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
PN QRLIF GK+L+DG TL+DY+IQKESTLHLV
Sbjct: 358 PNLQRLIFLGKELKDGCTLADYSIQKESTLHLV 390
Score = 57.2 bits (132), Expect = 5e-09
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 106
G PP+QQ L+F G QL+DGRTL DYNI+ ESTLHL
Sbjct: 427 GSPPDQQILLFRGGQLQDGRTLGDYNIRNESTLHL 461
Score = 54.0 bits (124), Expect = 5e-08
Identities = 25/36 (69%), Positives = 30/36 (83%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GI P+QQ LIF G+QLEDG TL DY+I K+STL+LV
Sbjct: 586 GIKPDQQMLIFFGQQLEDGVTLGDYDIHKKSTLYLV 621
Score = 51.2 bits (117), Expect = 3e-07
Identities = 25/35 (71%), Positives = 28/35 (80%)
Frame = +2
Query: 5 IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
IP + RLIFAGK LE GRTL+ YNIQK STL+LV
Sbjct: 278 IPMDLHRLIFAGKPLEGGRTLAHYNIQKGSTLYLV 312
Score = 48.0 bits (109), Expect = 3e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLH 103
GIP ++QRLIF G+ L RTL DYNIQK ST+H
Sbjct: 510 GIPLDRQRLIFGGRVLVGSRTLLDYNIQKGSTIH 543
Score = 41.9 bits (94), Expect = 2e-04
Identities = 21/37 (56%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQL--EDGRTLSDYNIQKESTLHL 106
G+ P+ QRLIF G++L ED RTL+DY I+ STL L
Sbjct: 194 GLRPDHQRLIFHGEELFTEDNRTLADYGIRNRSTLCL 230
>At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam
profile: PF00240 ubiquitin family
Length = 158
Score = 60.9 bits (141), Expect = 4e-10
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIP +QQRLIF GKQLEDG TL+DYNIQ +S LHL+
Sbjct: 120 GIPVDQQRLIFKGKQLEDGLTLADYNIQNDSILHLI 155
>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
from [Arabidopsis thaliana]
Length = 78
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/36 (52%), Positives = 25/36 (69%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
GIPP QR+++ GKQL D T YN+++ S LHLV
Sbjct: 35 GIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLV 70
>At5g42220.1 68418.m05139 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 879
Score = 44.4 bits (100), Expect = 4e-05
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
G+P QQRLIF G+ L+D LS+Y+++ TLHL+
Sbjct: 58 GVPVGQQRLIFRGRVLKDDHPLSEYHLENGHTLHLI 93
>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
GI:9937505; contains Pfam profiles PF00240: Ubiquitin
family, PF00627: UBA/TS-N domain
Length = 551
Score = 43.6 bits (98), Expect = 7e-05
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = +2
Query: 5 IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
+P NQQRLI+ G+ L+D +TL Y +Q + T+H+V
Sbjct: 53 VPANQQRLIYKGRILKDDQTLLSYGLQADHTIHMV 87
>At2g17190.1 68415.m01985 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 538
Score = 43.2 bits (97), Expect = 9e-05
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = +2
Query: 5 IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
+P NQQRLI+ G+ L+D +TL Y +Q + T+H+V
Sbjct: 53 VPANQQRLIYKGRILKDDQTLLSYGLQADHTVHMV 87
>At5g11080.1 68418.m01294 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 352
Score = 36.7 bits (81), Expect = 0.008
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +2
Query: 8 PPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
P Q RL+F G+ L++ + LSDY++++ TL+LV
Sbjct: 48 PERQPRLLFRGRVLKNDQRLSDYHVEEGHTLYLV 81
>At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative similar
to SP|P39940 Ubiquitin--protein ligase RSP5 (EC 6.3.2.-)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00240: Ubiquitin family, PF00632: HECT-domain
(ubiquitin-transferase)
Length = 873
Score = 35.5 bits (78), Expect = 0.018
Identities = 15/35 (42%), Positives = 27/35 (77%)
Frame = +2
Query: 5 IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
IP +QR+I+ GKQL+ +L+ Y+I+++++L LV
Sbjct: 131 IPALEQRVIYKGKQLQRENSLTYYSIEQDASLQLV 165
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 32.7 bits (71), Expect = 0.13
Identities = 11/29 (37%), Positives = 22/29 (75%)
Frame = +2
Query: 23 RLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
++ + GK+LED ++L++ N+Q S +HL+
Sbjct: 542 KMFYMGKELEDEKSLAEQNVQPNSLVHLL 570
>At1g53950.1 68414.m06145 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 216
Score = 31.5 bits (68), Expect = 0.30
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTL 100
G P +QQ L G +L++ T+SDYNI+ ++ L
Sbjct: 175 GPPVDQQDLNHLGTKLKNNATISDYNIKPDANL 207
>At2g46500.2 68415.m05791 phosphatidylinositol 3- and 4-kinase
family protein / ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 566
Score = 30.7 bits (66), Expect = 0.52
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +2
Query: 5 IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
+ P++Q +++ G++LED ++D +S LHL+
Sbjct: 148 VDPDEQEILYEGEKLEDQSLINDICRNDDSVLHLL 182
>At2g46500.1 68415.m05790 phosphatidylinositol 3- and 4-kinase
family protein / ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 566
Score = 30.7 bits (66), Expect = 0.52
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +2
Query: 5 IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
+ P++Q +++ G++LED ++D +S LHL+
Sbjct: 148 VDPDEQEILYEGEKLEDQSLINDICRNDDSVLHLL 182
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240:
Ubiquitin family
Length = 1919
Score = 30.7 bits (66), Expect = 0.52
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = +2
Query: 23 RLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
++ + GK+L+D ++L+ N+Q S +HL+
Sbjct: 703 KMFYKGKELDDEKSLAAQNVQPNSLVHLI 731
>At5g14360.1 68418.m01678 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 163
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLED 55
G+ P QQRL+F GK+ ED
Sbjct: 103 GLEPKQQRLVFKGKERED 120
>At4g03370.1 68417.m00459 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 295
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 5 IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 106
IP ++Q + F GK LED + +++I + LHL
Sbjct: 36 IPVSRQTIFFQGKLLEDHLDIFEWDILQNPLLHL 69
>At3g14130.1 68416.m01787 (S)-2-hydroxy-acid oxidase, peroxisomal,
putative / glycolate oxidase, putative / short chain
alpha-hydroxy acid oxidase, putative similar to Chain A,
Glycolate Oxidase (E.C.1.1.3.15) Mutant With Tyr 24
Replaced By Phe (Y24f) gi|999542
Length = 363
Score = 29.1 bits (62), Expect = 1.6
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -2
Query: 109 HQVEGGF--LLDIVVREGTSIFQLLSSKDQPLLIGR 8
H V+G LLD VR GT +F+ L+ Q +LIGR
Sbjct: 272 HAVKGRIPVLLDGGVRRGTDVFKALALGAQAVLIGR 307
>At4g02970.1 68417.m00404 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 270
Score = 27.9 bits (59), Expect = 3.7
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 106
GIP ++Q L GK LED DY I ES L L
Sbjct: 35 GIPVSKQILYLDGKALEDDLHKIDYMILFESRLLL 69
>At3g14150.1 68416.m01789 (S)-2-hydroxy-acid oxidase, peroxisomal,
putative / glycolate oxidase, putative / short chain
alpha-hydroxy acid oxidase, putative similar to
(S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate
oxidase, GOX) (Short chain alpha-hydroxy acid oxidase)
[Spinacia oleracea] SWISS-PROT:P05414
Length = 363
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -2
Query: 88 LLDIVVREGTSIFQLLSSKDQPLLIGR 8
LLD VR GT +F+ L+ Q +LIGR
Sbjct: 281 LLDGGVRRGTDVFKALALGAQAVLIGR 307
>At4g03350.1 68417.m00457 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 263
Score = 27.5 bits (58), Expect = 4.8
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +2
Query: 2 GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTL 100
GIP ++Q L GK LED DY I ES L
Sbjct: 35 GIPVSKQILYLDGKALEDDLHKIDYMILFESLL 67
>At4g01000.1 68417.m00135 ubiquitin family protein low similarity to
SP|P13117 Ubiquitin. {Neurospora crassa}; contains Pfam
profile PF00240: Ubiquitin family
Length = 415
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 5 IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 109
IP + QRLI G Q+ DG +S Q ++T++LV
Sbjct: 45 IPTHLQRLISGGYQISDGSAIS----QPDATVNLV 75
>At3g24480.1 68416.m03070 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 494
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 469 FFFFFFELRHCVKILFKIHHTQQSRAFLQARGDLF 365
FFFFFFE+ H + I + F+Q R L+
Sbjct: 15 FFFFFFEISHSLSISSNAPLSDTEVRFIQRRQLLY 49
>At1g64900.1 68414.m07357 cytochrome P450, putative similar to
cytochrome p450 GI:438240 from [Solanum melongena]
Length = 506
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 414 IIHSSRERSYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHRH 292
I+H SR RSY ++ ++FE R + ++HH H
Sbjct: 136 ILHPSRVRSYSHARHWVLEILFERFRNHGGEEPIVLIHHLH 176
>At2g20130.1 68415.m02352 expressed protein contains Pfam domain,
PF04367: Protein of unknown function (DUF502)
Length = 256
Score = 26.6 bits (56), Expect = 8.5
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = -2
Query: 118 KPQHQVEGGFLLDIVVREGTSIFQLLSSKDQPLL-IGRDS 2
+P V G ++IVV G S+ Q+LS+ D+PL IG +S
Sbjct: 219 RPNLSVREG--IEIVVSGGMSMPQILSTLDKPLASIGNES 256
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,439,255
Number of Sequences: 28952
Number of extensions: 164781
Number of successful extensions: 581
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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