Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00051
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338...    32   0.54 
12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-53...    30   1.6  
11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-45...    30   1.6  
11_08_0101 + 28352774-28353865                                         29   3.8  

>10_01_0307 +
           3382432-3382608,3382690-3382863,3383600-3383695,
           3384640-3384709,3385878-3386002,3387128-3387268,
           3387362-3387519,3387644-3387803,3390136-3390213,
           3390326-3390385,3390473-3390528,3391886-3392090,
           3394107-3394192,3394296-3394406,3394536-3394607,
           3395453-3395538,3395730-3395878,3396107-3396250,
           3396335-3396442,3396997-3397027,3397609-3397713,
           3398283-3398407,3398807-3398950,3399073-3399177,
           3400748-3400799,3401549-3401696,3401936-3402130,
           3402404-3402647,3403152-3403259,3403887-3404034,
           3405467-3405525,3405876-3405945,3407008-3407333,
           3407666-3409204,3410526-3410733,3410870-3410906,
           3411024-3411072,3411143-3411271
          Length = 2025

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 38  TIFVFIIITSFLEVLSLECYVCENQEDNN 124
           T  +F +  +F+++LS   Y C N EDNN
Sbjct: 806 TCIIFHLQLAFIKILSQSHYACSNSEDNN 834


>12_01_0063 -
           535364-536085,536226-536439,536989-537981,538238-538255,
           538601-538860,539950-540073,540978-541310,541447-541531,
           541683-541768,541843-541941,542041-542180,542717-543043,
           543163-543774,543887-543971,543972-544067,544147-544500,
           544536-544559,544597-544707,544811-544894,545468-545546,
           546122-546279,546412-546528,546622-546780,546857-546939,
           547525-547627,549184-549495
          Length = 1925

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
 Frame = -2

Query: 351 AETAI*ALPVLIPNVRA*RHVLLSS---FRAFSFVKQLLDM*YCFFAPWD-----QYGVL 196
           AE  +  LP LI +  A   VLLS    FRA   + + LDM      PW        G+ 
Sbjct: 318 AEICLSKLPQLIADPNAEFQVLLSQSHRFRALVLLGRFLDM-----GPWAVDLALSVGIF 372

Query: 195 PHLISVRQTSWLCSQGFMVFTHFPLLS 115
           P+++ + QTS +  +  +VF    +LS
Sbjct: 373 PYVLKLLQTSAMELRQILVFIWTKILS 399


>11_01_0061 -
           456521-457389,457534-457659,458377-459307,459564-459581,
           459924-460183,461834-461918,462587-462919,463053-463137,
           463289-463374,463455-463556,463656-463795,464332-464658,
           464778-465389,465502-465586,465587-465682,465762-466115,
           466212-466322,466426-466509,467086-467164,467742-467899,
           468034-468150,468240-468398,468475-468557,469098-469200,
           470784-471080
          Length = 1899

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
 Frame = -2

Query: 351 AETAI*ALPVLIPNVRA*RHVLLSS---FRAFSFVKQLLDM*YCFFAPWD-----QYGVL 196
           AE  +  LP LI +  A   VLLS    FRA   + + LDM      PW        G+ 
Sbjct: 313 AEICLSKLPQLIADPNAEFQVLLSQSHRFRALVLLGRFLDM-----GPWAVDLALSVGIF 367

Query: 195 PHLISVRQTSWLCSQGFMVFTHFPLLS 115
           P+++ + QTS +  +  +VF    +LS
Sbjct: 368 PYVLKLLQTSAMELRQILVFIWTKILS 394


>11_08_0101 + 28352774-28353865
          Length = 363

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 283 QQNMPLCTYIWYQDWKCSDCCLGDRCNYY 369
           QQ+  L  ++   DW+  DCC    C+YY
Sbjct: 339 QQSSSLTNFLLTMDWRMDDCC----CHYY 363


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,580,453
Number of Sequences: 37544
Number of extensions: 317656
Number of successful extensions: 571
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)