Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00050
         (657 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    43   0.006
UniRef50_A2E0P9 Cluster: XPG I-region family protein; n=1; Trich...    35   2.0  
UniRef50_UPI00015BB0B9 Cluster: hypothetical protein Igni_0810; ...    34   3.5  
UniRef50_Q0SBM4 Cluster: Putative uncharacterized protein; n=1; ...    33   4.6  
UniRef50_Q7UI62 Cluster: Gluconolactonase [precursor]; n=3; Plan...    33   8.0  
UniRef50_Q6BVZ2 Cluster: Debaryomyces hansenii chromosome B of s...    33   8.0  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 43.2 bits (97), Expect = 0.006
 Identities = 20/42 (47%), Positives = 27/42 (64%)
 Frame = -1

Query: 144 SHRPRRILATKGSTSKLTHRHSPLRFSPDLLSGARCRTGGRF 19
           +H+    L T G +++  HR  PL FSPDLLSG+R RTG  +
Sbjct: 374 AHQVLASLKTTGHSTENEHRCCPLSFSPDLLSGSRFRTGAEY 415


>UniRef50_A2E0P9 Cluster: XPG I-region family protein; n=1;
           Trichomonas vaginalis G3|Rep: XPG I-region family
           protein - Trichomonas vaginalis G3
          Length = 388

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +3

Query: 126 FDEDGDWAILNVQYRLDTVLAYSA--LDVTTG*VRFKLIDPVNVTMIKRNDCFHYFKLNP 299
           ++ D   A L     +D VL   +  +   T  V +KL D + VT I+  D  ++ KL P
Sbjct: 149 YEADAQLAYLARSGYVDCVLTEDSDLIAYRTPLVLYKLDDSLQVTSIRYQDVLNFLKLTP 208

Query: 300 LNHSSLCM 323
            N +SLC+
Sbjct: 209 DNFTSLCI 216


>UniRef50_UPI00015BB0B9 Cluster: hypothetical protein Igni_0810;
           n=1; Ignicoccus hospitalis KIN4/I|Rep: hypothetical
           protein Igni_0810 - Ignicoccus hospitalis KIN4/I
          Length = 306

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 144 WAILNVQYRLDTVLAYSALDVTTG*VRFKLIDPVNVTMIKRNDCFHY 284
           W +L+    L T   Y    VTT  V + ++ P N  +    DCF Y
Sbjct: 20  WLVLSAMIALATARVYIVFPVTTTTVSYTMLQPNNTMIAFEGDCFPY 66


>UniRef50_Q0SBM4 Cluster: Putative uncharacterized protein; n=1;
           Rhodococcus sp. RHA1|Rep: Putative uncharacterized
           protein - Rhodococcus sp. (strain RHA1)
          Length = 185

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = +1

Query: 4   GAAFAESTTGTATRPTEKIRRESQWAVSMG*FTRRALR 117
           G A A S  G A RP     R S+W  + G FTR+ALR
Sbjct: 36  GTAGARSICGAARRPAGSPPRCSRWCGAAGVFTRQALR 73


>UniRef50_Q7UI62 Cluster: Gluconolactonase [precursor]; n=3;
           Planctomycetaceae|Rep: Gluconolactonase [precursor] -
           Rhodopirellula baltica
          Length = 395

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
 Frame = -3

Query: 259 IMVTFTGSINLNLTHPVVTSRALYASTVSKRYCTFRIAQSPSSSNP---CDEGLDE*INP 89
           +++     ++L+L H  V   A+ AS +S   C+  IAQ+PS+       D+ LD+ +  
Sbjct: 45  LLIEIPNMMSLSLCHRRVAFMAIAASMMSLMPCSGAIAQTPSTIGKVERLDDSLDQYVAK 104

Query: 88  *TQPTEILAGSSQW 47
            T+  E+LA    W
Sbjct: 105 GTK-IEVLAAGFTW 117


>UniRef50_Q6BVZ2 Cluster: Debaryomyces hansenii chromosome B of
           strain CBS767 of Debaryomyces hansenii; n=1;
           Debaryomyces hansenii|Rep: Debaryomyces hansenii
           chromosome B of strain CBS767 of Debaryomyces hansenii -
           Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
          Length = 360

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 21/95 (22%), Positives = 41/95 (43%)
 Frame = +3

Query: 93  LIYSSSPSSQGFDEDGDWAILNVQYRLDTVLAYSALDVTTG*VRFKLIDPVNVTMIKRND 272
           L ++S  SS  FD +   A    +    T L+    D+  G +    +D  N T+ +RN 
Sbjct: 147 LKHNSFNSSDFFDPNNLKAKHEREVFATTSLSTLIHDLNQGNISVGFLDATNTTLERRNK 206

Query: 273 CFHYFKLNPLNHSSLCMLEVHYR*YCVVEIEISGQ 377
              Y +  P    ++ ++++      ++   ISG+
Sbjct: 207 IMQYIRETPTRADNVILMDIQCNDQTLINFNISGK 241


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 628,795,938
Number of Sequences: 1657284
Number of extensions: 12313441
Number of successful extensions: 27595
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27588
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)