Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00050
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    28   1.4  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    27   3.1  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   7.3  
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual    25   7.3  
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    25   9.6  

>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 183 ALYLNDIAHLELPSHRPRRILATKGSTSKLTHRHSPLRFSPD 58
           +L LN++ HLE  +  P R+++     S  +   SPL  SP+
Sbjct: 263 SLRLNELEHLESLARDPHRMVSLVDGMSNGSPEDSPLLVSPN 304


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 618 NYLRMNTYYPTTILKWRNLGYFCYYMQD 535
           ++LR NT Y T ++ W + GY    M D
Sbjct: 535 DWLRRNTPYDTKVMSWWDYGYQIAGMAD 562


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 480 HSNHCSKSPSRARS 439
           H+NHC+ SPSR  S
Sbjct: 494 HNNHCAVSPSRRSS 507


>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 639 SNLPPNRNYLRMNTYYPTTILKWRNLGYFCY 547
           S  PP   Y+ + T + T  + WR +  F Y
Sbjct: 9   SQTPPVTRYIVLGTLFTTLAVYWRAITTFLY 39


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 333 HYR*YCVVEIEISGQCHVKK 392
           HYR Y V +IE +G C + K
Sbjct: 148 HYRRYVVSQIERAGNCSLAK 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,968
Number of Sequences: 5004
Number of extensions: 55182
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)