Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00050
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644...    29   2.5  
01_01_0412 - 3099509-3099634,3099758-3099904,3099991-3100089,310...    29   3.3  
02_02_0181 + 7541831-7541971,7542407-7543279,7544101-7544301,754...    28   7.5  
01_06_1171 - 35089719-35090336,35090596-35090715,35090851-350911...    28   7.5  
12_01_1009 - 10253409-10255033,10255301-10255610,10255707-102563...    27   9.9  
08_02_0313 - 15659600-15659716,15660376-15660495,15660581-156606...    27   9.9  
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    27   9.9  
02_04_0618 - 24428987-24429331,24429946-24430387,24433358-24433434     27   9.9  

>01_01_0827 +
           6443319-6446085,6446317-6446407,6446502-6448017,
           6448164-6448243,6449045-6449129,6449221-6449312,
           6449388-6449456,6449544-6449580,6449662-6449744,
           6450427-6450873,6450978-6451014,6451101-6451158,
           6451243-6451382,6451610-6451675,6451794-6451908,
           6453261-6453299,6453482-6453543
          Length = 1927

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -1

Query: 162 AHLELPSHRPRRILAT-KGSTSKLTHRHSPLRFSPDLLSGARCR-TGGR 22
           AHL  P + P  +L     STS+L + H+    SP  L G+R R T G+
Sbjct: 229 AHLFPPDNMPNGVLLDLNNSTSQLQNEHAKFVDSPARLFGSRIRQTSGK 277


>01_01_0412 -
           3099509-3099634,3099758-3099904,3099991-3100089,
           3100171-3100602,3101121-3101599,3101683-3101728
          Length = 442

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 78  GCVYGLIYSSSPSSQGFDEDGDWAILNVQYRLDTVL 185
           GCV  +IY SS   Q   +DG  AI   +Y+ +++L
Sbjct: 375 GCVREVIYCSSDEQQNDQDDGKCAICLEEYKDNSLL 410


>02_02_0181 +
           7541831-7541971,7542407-7543279,7544101-7544301,
           7544358-7544595,7545732-7545922
          Length = 547

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -1

Query: 75  LRFSPDLLSGARCR-TGGRFCEGCS 4
           +RF P + S   CR  GG FC GCS
Sbjct: 232 VRFHPIMCSRHHCRFCGGVFCGGCS 256


>01_06_1171 -
           35089719-35090336,35090596-35090715,35090851-35091108,
           35091934-35092563
          Length = 541

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 156 LELPSHRPRRILATKGSTSKLTHRHSPLRFSP 61
           L+ PS  PR+++    S + + H H  + FSP
Sbjct: 458 LQEPSAAPRKVMLKSTSLNGIIHHHPVVTFSP 489


>12_01_1009 -
           10253409-10255033,10255301-10255610,10255707-10256312,
           10256359-10256487
          Length = 889

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +3

Query: 102 SSSPSSQGFDEDGDW 146
           SSS SS+G D+DG+W
Sbjct: 17  SSSSSSRGVDDDGEW 31


>08_02_0313 -
           15659600-15659716,15660376-15660495,15660581-15660679,
           15660802-15660913,15661025-15661128,15661316-15661495,
           15661612-15661881,15662529-15662825,15663432-15663677
          Length = 514

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 138 RPRRILATKGSTSKLTHRHSPLRFSPDLLSGAR 40
           RPR + ++  S+S    R  PL FSP  +S ++
Sbjct: 38  RPRGVASSSSSSSSAGRRRRPLVFSPRAVSDSK 70


>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
            8905437-8905690,8905785-8908799,8908889-8909001,
            8909975-8910164,8910399-8910512,8910591-8910698,
            8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 503  NNYPNMANTRITAQSPHHEQDQDGFLKPSIYII 405
            NN+P +    +    P  EQ     LKP+I+I+
Sbjct: 1409 NNFPTIDENHVQRNKPREEQIFQQKLKPAIFIL 1441


>02_04_0618 - 24428987-24429331,24429946-24430387,24433358-24433434
          Length = 287

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 156 LELPSHRPRRILATKGSTSKLTHRHSPLRFSPDLLSGARC 37
           L  P+HR     +T+G+ SK T + +P   SP + + A C
Sbjct: 12  LRKPNHRAIEFASTRGTKSKFTRKINP-SLSPIVRNEADC 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,491,853
Number of Sequences: 37544
Number of extensions: 317479
Number of successful extensions: 672
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)