Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00050
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29945| Best HMM Match : DUF125 (HMM E-Value=1.7)                    29   3.3  
SB_1141| Best HMM Match : PA (HMM E-Value=3.3e-11)                     29   3.3  
SB_25938| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_24662| Best HMM Match : DUF229 (HMM E-Value=1.2e-26)                28   7.7  

>SB_29945| Best HMM Match : DUF125 (HMM E-Value=1.7)
          Length = 608

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 13  FAESTTGTATRPTEK-IRRESQWA-VSMG*FTRRALRRKDSTRTVT 144
           +AE+ TG A   T    RR + W     G +TRR + RKD  +T T
Sbjct: 244 YAETYTGRARAQTRTHARRHAWWEHEKAGTYTRRYIHRKDMAQTRT 289


>SB_1141| Best HMM Match : PA (HMM E-Value=3.3e-11)
          Length = 324

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +2

Query: 92  VNLLVEPFVARIRRGR*LGNSKCAISFRYSAS 187
           + + V P++A +RRG    N+K A +F+Y+A+
Sbjct: 110 IEVQVRPWIALVRRGSCRFNTKIANAFKYNAT 141


>SB_25938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 447

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -3

Query: 631 TAKPQLLTNEYLLPNNDFKMAEFRILLLLYAG 536
           T+KP++  N+Y +P+ ++   E ++   L+ G
Sbjct: 59  TSKPKVTNNDYAIPSKEYHFDEVKVDSSLFGG 90


>SB_24662| Best HMM Match : DUF229 (HMM E-Value=1.2e-26)
          Length = 972

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -3

Query: 631 TAKPQLLTNEYLLPNNDFKMAEFRILLLLYAG 536
           T+KP++  N+Y +P+ ++   E ++   L+ G
Sbjct: 59  TSKPKVTNNDYAIPSKEYHFDEVKVDSSLFGG 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,541,649
Number of Sequences: 59808
Number of extensions: 387080
Number of successful extensions: 767
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)