Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00050
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    26   0.28 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.36 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.4  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -1

Query: 174 LNDIAHLELPSHRPRRILATKGSTSKLTHRHSPLRFSP 61
           L D+    LPS R R  L +  ST      H P +F P
Sbjct: 372 LQDLRMSPLPSIRNRSGLVSGSSTPGTGREHDPAKFPP 409


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 10  AFAESTTGTATRPTEKIRRESQ 75
           A A  TTGT T PT ++R+  Q
Sbjct: 250 ATAAMTTGTTTIPTRRLRKRRQ 271


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 153 ELPSHRPRRILATKGSTSKLTHRHSP 76
           ELP H P  +  +K    +L+  H P
Sbjct: 378 ELPKHLPTSLTKSKMEVMELSDLHHP 403


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,177
Number of Sequences: 438
Number of extensions: 3746
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)