Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00050
         (657 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12630.1 68416.m01572 zinc finger (AN1-like) family protein c...    29   3.6  
At5g40680.1 68418.m04938 kelch repeat-containing F-box family pr...    27   8.3  

>At3g12630.1 68416.m01572 zinc finger (AN1-like) family protein
           contains Pfam domain, PF01428: AN1-like Zinc finger
          Length = 160

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -1

Query: 138 RPRRILATKGSTSKLTHRHSPLRFSPDLLSGARCRTGGRFC 16
           RPR I A K    ++ +R S  R    L +G RCR G  FC
Sbjct: 83  RPREIDAVKKRDQQIVNRCSGCRKKVGL-TGFRCRCGELFC 122


>At5g40680.1 68418.m04938 kelch repeat-containing F-box family
           protein contains Pfam:PF01344 Kelch motif
          Length = 415

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 228 KLIDPVNVTMIKRNDCFHYFKLNPLN 305
           KL+  + V +  R  CF Y+KLN LN
Sbjct: 68  KLMFDLEVEIFSRLSCFQYWKLNLLN 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,660,600
Number of Sequences: 28952
Number of extensions: 275098
Number of successful extensions: 579
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)