Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00048
(381 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa... 136 8e-34
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc... 131 4e-32
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 34 0.009
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc... 30 0.11
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S... 29 0.33
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 28 0.57
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 27 0.75
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc... 25 3.0
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 24 7.0
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 24 7.0
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 24 9.3
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 24 9.3
>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 136 bits (330), Expect = 8e-34
Identities = 60/88 (68%), Positives = 73/88 (82%)
Frame = +2
Query: 2 RKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMF 181
+KRRN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY +
Sbjct: 3 QKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYSEY 62
Query: 182 QLPKLYAKLHYCVSCAIHSKVVRNNRRK 265
+PKLY KL YCVSCAIHS+VVR R+
Sbjct: 63 TIPKLYIKLQYCVSCAIHSRVVRVRSRE 90
>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 131 bits (316), Expect = 4e-32
Identities = 57/88 (64%), Positives = 72/88 (81%)
Frame = +2
Query: 2 RKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMF 181
+KRRN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY +
Sbjct: 3 QKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEY 62
Query: 182 QLPKLYAKLHYCVSCAIHSKVVRNNRRK 265
+PK+Y KL YCVSCAIH++VVR R+
Sbjct: 63 AIPKIYVKLQYCVSCAIHARVVRVRSRE 90
Score = 23.8 bits (49), Expect = 9.3
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 253 QSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 336
+S++ RRIRT PP+ + RD R P A+ +
Sbjct: 87 RSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 33.9 bits (74), Expect = 0.009
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +2
Query: 89 KDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNNR--R 262
+DK K + R + + N ++Y +F++PK + +HS VV++NR
Sbjct: 60 EDKDTWKRLQREVTILRQLHHPNIITLYQVFRVPKYTVLALEYMDTDLHSMVVKHNRLDE 119
Query: 263 KTEESVLLPRVTSLGTCHVHR 325
T + V ++ CH+HR
Sbjct: 120 CTTRKIFRQIVHAIDYCHLHR 140
>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 30.3 bits (65), Expect = 0.11
Identities = 14/63 (22%), Positives = 31/63 (49%)
Frame = +2
Query: 116 IRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNNRRKTEESVLLPRV 295
+ N ++ + D N+ +Y +L K+Y + SC +H+ ++ NN + + + P
Sbjct: 34 LSNSLDLSKTPDYNNVQLYGFIRL-KIYKYVVLVTSCDLHAAILGNNIYRARKFAIFPIT 92
Query: 296 TSL 304
+L
Sbjct: 93 RTL 95
>SPCC126.15c |sec65||signal recognition particle subunit Sec65
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 28.7 bits (61), Expect = 0.33
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 77 RCVPKDKAIKKFVIRNIVEAAAVRDI 154
RCVPKDKAI + +NI A VRD+
Sbjct: 20 RCVPKDKAILNPLAKNI--ADVVRDL 43
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 27.9 bits (59), Expect = 0.57
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = -3
Query: 136 RFYDVPNHELFDSLVLWHAPRAVCASHSFNVTTSMLGASS 17
+ +DV + +L + + L P+A+C +S ++ TS++ SS
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 27.5 bits (58), Expect = 0.75
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +2
Query: 74 ARCVPKDKAIKKFVIRNIVEAA--AVRDINDASVY-PMFQLPKLYAKLHYCVSCAIHSKV 244
AR +D +IR +AA AV I + +++ + KL L C S A++SK+
Sbjct: 112 ARTFVEDGVSSHLIIRGYRKAAQLAVNKIKEIAIHLDLSDEGKLRDLLTKCASTAMNSKL 171
Query: 245 VRNN 256
+R+N
Sbjct: 172 IRSN 175
>SPAC12G12.10 |||WD repeat protein, human WDR21
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 420
Score = 25.4 bits (53), Expect = 3.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 335 LCTACGRDMSLGKLLLGGVRILLSFFDC 252
+C+ D S KLL+ G+ +S +DC
Sbjct: 297 ICSMQNLDFSQPKLLVSGLESKISLYDC 324
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 24.2 bits (50), Expect = 7.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 223 MRHPQQSCQEQSKKDRRIRTPPKSNFPRDMSR 318
MR+ + + IRTP KS FP+D ++
Sbjct: 140 MRYKKNLTKISKNHHSIIRTPKKSYFPKDHAK 171
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 24.2 bits (50), Expect = 7.0
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -1
Query: 303 REVTLGRSTDSSVFLRLFLTTLLWMAH 223
R TL T VFLR L LLW H
Sbjct: 369 RNNTLPLLTTKRVFLRGVLEELLWFIH 395
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 23.8 bits (49), Expect = 9.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 142 RRRFYDVPNHELFDSLVLWHAPRA 71
R F +V N L +S+ ++H PRA
Sbjct: 363 RNAFLNVANKYLPNSVCIYHVPRA 386
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 23.8 bits (49), Expect = 9.3
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2
Query: 71 CARCVPKDKAIKKFVIRNIVEAAAVRDINDAS 166
C R P KA+ +RN +E A I D +
Sbjct: 1214 CCRSSPMQKALMVQKVRNTLEKAVTLAIGDGA 1245
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,384,307
Number of Sequences: 5004
Number of extensions: 24423
Number of successful extensions: 81
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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