Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00048
         (381 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474...   137   2e-33
09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280           30   0.54 
08_02_1601 - 28138206-28138597,28138928-28139054,28139150-281399...    27   3.8  
07_03_1381 - 26166673-26166747,26166972-26167544                       27   3.8  
05_03_0038 + 7612866-7613132,7615691-7616608                           27   3.8  
09_02_0195 + 5643549-5645090                                           27   6.6  
05_01_0554 + 4856131-4856605,4858051-4858098,4860611-4860792,486...    27   6.6  
09_04_0525 + 18326429-18326780,18327870-18328068,18328597-18329458     26   8.7  
04_01_0268 - 3585907-3588086,3590167-3590326                           26   8.7  

>01_06_1177 +
           35147036-35147038,35147128-35147220,35147322-35147406,
           35147588-35147760
          Length = 117

 Score =  137 bits (332), Expect = 2e-33
 Identities = 58/87 (66%), Positives = 73/87 (83%)
 Frame = +2

Query: 5   KRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQ 184
           KRRNGGR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIVE AA+RD+ +A V+  + 
Sbjct: 4   KRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHDGYV 63

Query: 185 LPKLYAKLHYCVSCAIHSKVVRNNRRK 265
           LPKLYAK+H+CVSCAIH+ +VR   R+
Sbjct: 64  LPKLYAKVHHCVSCAIHAHIVRVRSRE 90


>09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280
          Length = 422

 Score = 30.3 bits (65), Expect = 0.54
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 205 APLLRVMRHPQQSCQEQSKKDRRIRTPPK 291
           +PL R++R     C  ++KK+RR+R P K
Sbjct: 317 SPLFRILRTLFGLCSAEAKKNRRLRNPAK 345


>08_02_1601 -
           28138206-28138597,28138928-28139054,28139150-28139914,
           28140714-28140929,28141433-28141903
          Length = 656

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -3

Query: 163 GIVNISDRRRFYDVPNHELFDSLVLWHAPRAVCASHSFN--VTTSMLGASSIT 11
           GI  + D   +YD  +  LF+ L+    P A  +SH+F+  V T  +  S+ T
Sbjct: 439 GIDMVDDGMPYYDAMDDNLFNDLLSSVQPSAGSSSHAFSGPVLTQEVNNSTYT 491


>07_03_1381 - 26166673-26166747,26166972-26167544
          Length = 215

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 215 CVSCAIHSKVVRNNRR 262
           C  CA+H +V +NNRR
Sbjct: 53  CAGCALHIRVFQNNRR 68


>05_03_0038 + 7612866-7613132,7615691-7616608
          Length = 394

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 205 APLLRVMRHPQQSCQEQSKKDRRIRTPPK 291
           +PL R++R     C  ++KK+RR+R   K
Sbjct: 305 SPLFRILRSLFGLCSAEAKKNRRLRNSAK 333


>09_02_0195 + 5643549-5645090
          Length = 513

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 205 APLLRVMRHPQQSCQEQSKKDRRIR 279
           +PL R++R     C  ++KK+RR+R
Sbjct: 408 SPLFRILRTIFSLCSAEAKKNRRLR 432


>05_01_0554 +
           4856131-4856605,4858051-4858098,4860611-4860792,
           4861409-4863136
          Length = 810

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 145 DRRRFYDVPNHELFD 101
           DR  FYD PN+E FD
Sbjct: 354 DRTLFYDEPNYEAFD 368


>09_04_0525 + 18326429-18326780,18327870-18328068,18328597-18329458
          Length = 470

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 224 CAIHSKVVRNNRRKTE-ESVLLPRVTSLGTCHVHRQCKGSD 343
           C I    +RN++++ +  S  +  + SLG  HVH +   SD
Sbjct: 266 CCIFKFSIRNHKKQKKCHSKKIGSIPSLGGSHVHPEILASD 306


>04_01_0268 - 3585907-3588086,3590167-3590326
          Length = 779

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 240 LLWMAHDTQ*WSLAYNLGSWNIGYT 166
           +LW+A+    W+  Y LGS ++G T
Sbjct: 100 VLWLAYQLGGWAGTYALGSMSLGRT 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,902,912
Number of Sequences: 37544
Number of extensions: 191919
Number of successful extensions: 503
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)