Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00048
         (381 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical pr...   146   6e-36
AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical...    30   0.49 
AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical ...    30   0.49 
Z66561-4|CAA91457.2|  185|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory cy...    27   6.0  
AF024497-4|AAO21479.1|  807|Caenorhabditis elegans Defective in ...    27   6.0  
AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in ...    27   6.0  
AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in ...    27   6.0  
AC024770-8|AAF59486.1|  740|Caenorhabditis elegans Hypothetical ...    27   6.0  
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    26   7.9  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    26   7.9  

>Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical
           protein F39B2.6 protein.
          Length = 117

 Score =  146 bits (353), Expect = 6e-36
 Identities = 65/87 (74%), Positives = 71/87 (81%)
 Frame = +2

Query: 5   KRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQ 184
           KRRN GR K  RGHV  +RCTNC RC PKDKAIKKFV+RNIVEAAAVRDI DAS Y  + 
Sbjct: 4   KRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQYA 63

Query: 185 LPKLYAKLHYCVSCAIHSKVVRNNRRK 265
           LPKLY KLHYC++CAIHSKVVRN  R+
Sbjct: 64  LPKLYHKLHYCIACAIHSKVVRNRSRE 90


>AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10b protein.
          Length = 312

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
 Frame = +2

Query: 44  HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQL-PKLYAKLHYCV 220
           H+K ++C NC+     +K+++  +IR+  E A   ++  A      +L P    K H   
Sbjct: 80  HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 139

Query: 221 SCAIHSKVVRNNR-RKTEESVLLPRVTSLGT 310
            C    K++   R  K  +   LP   +L T
Sbjct: 140 -CKNREKIIEKQRVSKILKVQSLPSSPALST 169


>AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10a protein.
          Length = 430

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
 Frame = +2

Query: 44  HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQL-PKLYAKLHYCV 220
           H+K ++C NC+     +K+++  +IR+  E A   ++  A      +L P    K H   
Sbjct: 198 HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 257

Query: 221 SCAIHSKVVRNNR-RKTEESVLLPRVTSLGT 310
            C    K++   R  K  +   LP   +L T
Sbjct: 258 -CKNREKIIEKQRVSKILKVQSLPSSPALST 287


>Z66561-4|CAA91457.2|  185|Caenorhabditis elegans Hypothetical
           protein F08G12.5 protein.
          Length = 185

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
 Frame = +2

Query: 77  RCVPKD--KAIKKFVIRNIVEAAA----VRDINDASVYPMFQ-LPKL----YAKLHYCVS 223
           R +PKD  KA KK V++++ EA      V  +  A    +FQ +P+     ++  H C+ 
Sbjct: 7   RFIPKDDKKADKKRVLKSLDEADVCVVDVETLRCAVCLNIFQGIPQTLTCGHSFCHRCIE 66

Query: 224 CAIHSKVVRNNRRKTEESVLLP 289
              HS+V+ + R     S   P
Sbjct: 67  EVAHSEVMNDTREPNRNSFHCP 88


>AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory
           cytoplasmic polyA polymeraseprotein.
          Length = 1113

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +2

Query: 110 FVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNNRRKTEES 277
           FV ++ +  +++   N +   P  ++P++  KL   V+ A H K +  NRR+  +S
Sbjct: 414 FVGKSSLVGSSLNTRNSSEADPE-EMPRIMEKLDDEVTGADHDKTIDENRRRIHKS 468


>AF024497-4|AAO21479.1|  807|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform d protein.
          Length = 807

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +2

Query: 110 FVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNNRRKTEES 277
           FV ++ +  +++   N +   P  ++P++  KL   V+ A H K +  NRR+  +S
Sbjct: 108 FVGKSSLVGSSLNTRNSSEADPE-EMPRIMEKLDDEVTGADHDKTIDENRRRIHKS 162


>AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform c protein.
          Length = 1036

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +2

Query: 110 FVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNNRRKTEES 277
           FV ++ +  +++   N +   P  ++P++  KL   V+ A H K +  NRR+  +S
Sbjct: 337 FVGKSSLVGSSLNTRNSSEADPE-EMPRIMEKLDDEVTGADHDKTIDENRRRIHKS 391


>AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform a protein.
          Length = 1113

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +2

Query: 110 FVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNNRRKTEES 277
           FV ++ +  +++   N +   P  ++P++  KL   V+ A H K +  NRR+  +S
Sbjct: 414 FVGKSSLVGSSLNTRNSSEADPE-EMPRIMEKLDDEVTGADHDKTIDENRRRIHKS 468


>AC024770-8|AAF59486.1|  740|Caenorhabditis elegans Hypothetical
           protein Y39H10A.2 protein.
          Length = 740

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 282 STDSSVFLRLFLTTLLWMAHDTQ*WSLAYNLGSWNIGY 169
           S D+  F+  FL + LW     + W+   + G W + Y
Sbjct: 351 SVDTFFFISAFLLSFLWFKQLEKQWNALLSPGGWLMFY 388


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 245  VRNNRRKTEESVLLPRVTSLGTCHVHR 325
            VRN RR+ EE   +PR   +  C ++R
Sbjct: 2821 VRNKRRE-EEGAWIPRTVDVSRCEINR 2846


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 245  VRNNRRKTEESVLLPRVTSLGTCHVHR 325
            VRN RR+ EE   +PR   +  C ++R
Sbjct: 2826 VRNKRRE-EEGAWIPRTVDVSRCEINR 2851


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,886,503
Number of Sequences: 27780
Number of extensions: 149795
Number of successful extensions: 382
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)