Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00047
(550 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P50882 Cluster: 60S ribosomal protein L9; n=17; Eukaryo... 153 2e-36
UniRef50_O02376 Cluster: 60S ribosomal protein L9; n=1; Haemonch... 127 1e-28
UniRef50_P32969 Cluster: 60S ribosomal protein L9; n=86; Eukaryo... 126 3e-28
UniRef50_P49210 Cluster: 60S ribosomal protein L9; n=55; Eukaryo... 113 3e-24
UniRef50_Q54XI5 Cluster: 60S ribosomal protein L9; n=1; Dictyost... 111 1e-23
UniRef50_Q10232 Cluster: 60S ribosomal protein L9-A; n=6; Eukary... 104 1e-21
UniRef50_P05738 Cluster: 60S ribosomal protein L9-A; n=40; Eukar... 103 2e-21
UniRef50_UPI0000D9FBAF Cluster: PREDICTED: similar to 60S riboso... 98 1e-19
UniRef50_Q7QU08 Cluster: GLP_108_35846_36403; n=1; Giardia lambl... 93 3e-18
UniRef50_Q4P4X4 Cluster: Putative uncharacterized protein; n=1; ... 93 5e-18
UniRef50_UPI00004985C5 Cluster: 60S ribosomal protein L9; n=2; E... 92 9e-18
UniRef50_A0DI71 Cluster: Chromosome undetermined scaffold_51, wh... 92 9e-18
UniRef50_Q9AW64 Cluster: 60S ribosomal protein L9; n=1; Guillard... 85 8e-16
UniRef50_Q5JJG4 Cluster: 50S ribosomal protein L6P; n=3; Archaea... 82 7e-15
UniRef50_UPI0000DA3DDB Cluster: PREDICTED: similar to 60S riboso... 79 7e-14
UniRef50_A1RXT3 Cluster: Ribosomal protein L6; n=2; Thermoprotei... 76 6e-13
UniRef50_Q8U015 Cluster: 50S ribosomal protein L6P; n=14; Euryar... 75 8e-13
UniRef50_UPI0001554F35 Cluster: PREDICTED: similar to Chain A, S... 73 3e-12
UniRef50_Q8SSF7 Cluster: 60S RIBOSOMAL PROTEIN L9; n=1; Encephal... 72 8e-12
UniRef50_A0RVY9 Cluster: Ribosomal protein L6P/L9E; n=1; Cenarch... 69 9e-11
UniRef50_Q74MR6 Cluster: 50S ribosomal protein L6P; n=1; Nanoarc... 64 3e-09
UniRef50_Q3LWE8 Cluster: Ribosomal protein L9; n=1; Bigelowiella... 63 4e-09
UniRef50_Q8PV34 Cluster: 50S ribosomal protein L6P; n=4; Methano... 63 4e-09
UniRef50_A2GN76 Cluster: Ribosomal protein L6, putative; n=2; Tr... 63 5e-09
UniRef50_A3CT13 Cluster: 50S ribosomal protein L6P; n=2; Methano... 62 6e-09
UniRef50_Q673R2 Cluster: 50S ribosomal protein L6P; n=2; environ... 62 8e-09
UniRef50_O05637 Cluster: 50S ribosomal protein L6P; n=8; Thermop... 60 4e-08
UniRef50_O28370 Cluster: 50S ribosomal protein L6P; n=4; Euryarc... 58 1e-07
UniRef50_Q8ZVA7 Cluster: 50S ribosomal protein L6P; n=5; Thermop... 58 1e-07
UniRef50_A7DSX9 Cluster: Ribosomal protein L6; n=1; Candidatus N... 56 4e-07
UniRef50_P14135 Cluster: 50S ribosomal protein L6P; n=5; Halobac... 56 5e-07
UniRef50_Q8TW14 Cluster: 50S ribosomal protein L6P; n=3; cellula... 55 9e-07
UniRef50_UPI000021E22B Cluster: PREDICTED: similar to ribosomal ... 54 2e-06
UniRef50_Q97BW0 Cluster: 50S ribosomal protein L6P; n=1; Thermop... 51 2e-05
UniRef50_Q5AEN3 Cluster: Putative uncharacterized protein; n=1; ... 51 2e-05
UniRef50_A0BWM5 Cluster: Chromosome undetermined scaffold_132, w... 46 4e-04
UniRef50_Q6L1B1 Cluster: 50S ribosomal protein L6P; n=3; Thermop... 44 0.002
UniRef50_A4M9T7 Cluster: 50S ribosomal protein L6; n=3; Thermoto... 42 0.009
UniRef50_Q661C7 Cluster: 50S ribosomal protein L6; n=9; cellular... 42 0.009
UniRef50_Q8ETW8 Cluster: 50S ribosomal protein L6; n=40; Bacteri... 41 0.022
UniRef50_P46898 Cluster: 50S ribosomal protein L6; n=7; Bacilli|... 41 0.022
UniRef50_Q8R7W9 Cluster: 50S ribosomal protein L6; n=22; Bacteri... 40 0.029
UniRef50_Q48D51 Cluster: 50S ribosomal protein L6; n=6; Proteoba... 40 0.029
UniRef50_Q9ZI38 Cluster: 50S ribosomal protein L6; n=2; Aquifex ... 38 0.12
UniRef50_Q9ZAE4 Cluster: 50S ribosomal protein L6; n=4; cellular... 38 0.15
UniRef50_A5GIT1 Cluster: 50S ribosomal protein L6; n=7; Bacteria... 38 0.20
UniRef50_Q2JIL3 Cluster: 50S ribosomal protein L6; n=44; cellula... 37 0.35
UniRef50_Q7VQD3 Cluster: 50S ribosomal subunit protein L6; n=2; ... 36 0.62
UniRef50_Q6KI40 Cluster: 50S ribosomal protein l6; n=4; Mycoplas... 36 0.82
UniRef50_O67565 Cluster: 50S ribosomal protein L6; n=1; Aquifex ... 36 0.82
UniRef50_Q8KAI6 Cluster: 50S ribosomal protein L6; n=15; Bacteri... 35 1.1
UniRef50_UPI0000DA368E Cluster: PREDICTED: similar to 60S riboso... 35 1.4
UniRef50_A5LSZ6 Cluster: 50S ribosomal protein L6; n=1; Streptoc... 34 1.9
UniRef50_Q4QI55 Cluster: Putative uncharacterized protein; n=3; ... 34 1.9
UniRef50_Q8WTL7 Cluster: Putative uncharacterized protein; n=1; ... 34 2.5
UniRef50_Q8XPL8 Cluster: Putative surface-exposed adhesin protei... 33 3.3
UniRef50_Q847P4 Cluster: 50S ribosomal protein L6; n=1; Aster ye... 33 3.3
UniRef50_Q0ID19 Cluster: 50S ribosomal protein L6; n=6; Bacteria... 33 3.3
UniRef50_Q8A491 Cluster: 50S ribosomal protein L6; n=34; Bacteri... 33 3.3
UniRef50_O23049 Cluster: 50S ribosomal protein L6, chloroplast p... 33 3.3
UniRef50_Q90Y13 Cluster: STAT6; n=7; Clupeocephala|Rep: STAT6 - ... 33 4.4
UniRef50_Q6YR07 Cluster: 50S ribosomal protein L6; n=16; Firmicu... 33 4.4
UniRef50_Q9PAD6 Cluster: ABC transporter ATP-binding protein; n=... 33 5.8
UniRef50_Q4UCX9 Cluster: Glutamate-cysteine ligase, putative; n=... 33 5.8
UniRef50_Q966K1 Cluster: Putative uncharacterized protein; n=1; ... 32 7.6
UniRef50_A7TES6 Cluster: Putative uncharacterized protein; n=1; ... 32 7.6
UniRef50_Q9ZCS0 Cluster: 50S ribosomal protein L6; n=10; Rickett... 32 7.6
>UniRef50_P50882 Cluster: 60S ribosomal protein L9; n=17;
Eukaryota|Rep: 60S ribosomal protein L9 - Drosophila
melanogaster (Fruit fly)
Length = 190
Score = 153 bits (372), Expect = 2e-36
Identities = 74/88 (84%), Positives = 80/88 (90%)
Frame = +1
Query: 247 PHYCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAA 426
P CVT+E N++IEIRNFLGEKYIRRV+MAPGVTVVNS QKDELI+EGN +E VS SAA
Sbjct: 98 PINCVTSENNTVIEIRNFLGEKYIRRVEMAPGVTVVNSTAQKDELIVEGNDIESVSGSAA 157
Query: 427 LIQQSTTVKNKDIRKFLDGLYVSEKTTV 510
LIQQSTTVKNKDIRKFLDGLYVSEKTTV
Sbjct: 158 LIQQSTTVKNKDIRKFLDGLYVSEKTTV 185
Score = 138 bits (334), Expect = 8e-32
Identities = 63/80 (78%), Positives = 72/80 (90%)
Frame = +2
Query: 14 VKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMI 193
VK+R+VT+ G RG LKR+FKHLA+D+ M + R LKVEKWFG+KKELAAVRTVCSH+ENMI
Sbjct: 20 VKARVVTITGTRGTLKRSFKHLALDMYMPDKRTLKVEKWFGTKKELAAVRTVCSHIENMI 79
Query: 194 KGVTKGFQYKMRAVYAHFPI 253
KGVT GFQYKMRAVYAHFPI
Sbjct: 80 KGVTFGFQYKMRAVYAHFPI 99
>UniRef50_O02376 Cluster: 60S ribosomal protein L9; n=1; Haemonchus
contortus|Rep: 60S ribosomal protein L9 - Haemonchus
contortus (Barber pole worm)
Length = 141
Score = 127 bits (307), Expect = 1e-28
Identities = 55/87 (63%), Positives = 72/87 (82%)
Frame = +2
Query: 2 LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHV 181
+T VK+R+V V GPRG LKR+F+HL +++ V L+V KWFG +KE+AA+RTVCSH+
Sbjct: 16 VTFTVKNRVVHVTGPRGTLKRDFRHLHMEMERVGKNQLRVRKWFGVRKEIAAIRTVCSHI 75
Query: 182 ENMIKGVTKGFQYKMRAVYAHFPITVS 262
+NMIKGVTKGF+YKMR+VYAHFPI V+
Sbjct: 76 QNMIKGVTKGFRYKMRSVYAHFPINVT 102
>UniRef50_P32969 Cluster: 60S ribosomal protein L9; n=86;
Eukaryota|Rep: 60S ribosomal protein L9 - Homo sapiens
(Human)
Length = 192
Score = 126 bits (304), Expect = 3e-28
Identities = 63/88 (71%), Positives = 71/88 (80%)
Frame = +1
Query: 247 PHYCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAA 426
P V E S++EIRNFLGEKYIRRV+M PGV S QKDELI+EGN +E VS+SAA
Sbjct: 100 PINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAA 159
Query: 427 LIQQSTTVKNKDIRKFLDGLYVSEKTTV 510
LIQQ+TTVKNKDIRKFLDG+YVSEK TV
Sbjct: 160 LIQQATTVKNKDIRKFLDGIYVSEKGTV 187
Score = 117 bits (282), Expect = 2e-25
Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 2/86 (2%)
Frame = +2
Query: 8 VHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL--LKVEKWFGSKKELAAVRTVCSHV 181
+ +K R V VKGPRG L+R+F H+ V++ ++ + L+V+KW+G++KELA VRT+CSHV
Sbjct: 18 ITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHV 77
Query: 182 ENMIKGVTKGFQYKMRAVYAHFPITV 259
+NMIKGVT GF+YKMR+VYAHFPI V
Sbjct: 78 QNMIKGVTLGFRYKMRSVYAHFPINV 103
>UniRef50_P49210 Cluster: 60S ribosomal protein L9; n=55;
Eukaryota|Rep: 60S ribosomal protein L9 - Oryza sativa
subsp. japonica (Rice)
Length = 190
Score = 113 bits (271), Expect = 3e-24
Identities = 50/88 (56%), Positives = 70/88 (79%), Gaps = 1/88 (1%)
Frame = +2
Query: 2 LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RLLKVEKWFGSKKELAAVRTVCSH 178
+TV V +++VTV+GPRG L RNFKHL +D +++ R L+V+ WFG+++ +AA+RT SH
Sbjct: 16 VTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWFGTRRTMAAIRTAISH 75
Query: 179 VENMIKGVTKGFQYKMRAVYAHFPITVS 262
V+N+I GVTKG++YKMR VYAHFPI S
Sbjct: 76 VQNLITGVTKGYRYKMRFVYAHFPINAS 103
Score = 109 bits (263), Expect = 3e-23
Identities = 52/82 (63%), Positives = 64/82 (78%)
Frame = +1
Query: 265 TEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQST 444
T N+ IEIRNFLGEK +R+V M GVT++ S K KDEL+++GN +E VS SAALI Q
Sbjct: 105 TNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKC 164
Query: 445 TVKNKDIRKFLDGLYVSEKTTV 510
VKNKDIRKFLDG+YVS+K T+
Sbjct: 165 HVKNKDIRKFLDGIYVSDKGTI 186
>UniRef50_Q54XI5 Cluster: 60S ribosomal protein L9; n=1;
Dictyostelium discoideum AX4|Rep: 60S ribosomal protein
L9 - Dictyostelium discoideum AX4
Length = 206
Score = 111 bits (266), Expect = 1e-23
Identities = 48/87 (55%), Positives = 66/87 (75%)
Frame = +2
Query: 2 LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHV 181
+TV VK R V V GPRG L ++F H +VDI +V + L V+ WFG++K++A ++T+ S +
Sbjct: 34 VTVDVKGRSVKVTGPRGTLSKSFDHASVDINLVGKKELTVDLWFGNRKQIACIKTITSII 93
Query: 182 ENMIKGVTKGFQYKMRAVYAHFPITVS 262
ENMI GVTKG++YKMR VYAHFPI V+
Sbjct: 94 ENMITGVTKGYEYKMRFVYAHFPINVA 120
Score = 97.5 bits (232), Expect = 2e-19
Identities = 42/88 (47%), Positives = 61/88 (69%)
Frame = +1
Query: 247 PHYCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAA 426
P T+G ++EIRNF GEK +RR+++ G+T + K KDE+++ GNSLE +S S A
Sbjct: 116 PINVAVTDGGRVVEIRNFFGEKIVRRIELLDGITCYRNEKAKDEIVLTGNSLELLSQSCA 175
Query: 427 LIQQSTTVKNKDIRKFLDGLYVSEKTTV 510
IQ + +K KD+RKFLDG+YVSE+ +
Sbjct: 176 TIQLRSAIKYKDVRKFLDGIYVSERNVL 203
>UniRef50_Q10232 Cluster: 60S ribosomal protein L9-A; n=6;
Eukaryota|Rep: 60S ribosomal protein L9-A -
Schizosaccharomyces pombe (Fission yeast)
Length = 190
Score = 104 bits (250), Expect = 1e-21
Identities = 50/82 (60%), Positives = 63/82 (76%)
Frame = +1
Query: 265 TEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQST 444
TE +++EIRNFLGE+ R +K PGVTV S KDE+I+EGNSLE+VS SAA I+Q
Sbjct: 104 TENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQIC 163
Query: 445 TVKNKDIRKFLDGLYVSEKTTV 510
V+NKDIRKFLDG+YVSE+ +
Sbjct: 164 NVRNKDIRKFLDGIYVSERGNI 185
Score = 94.3 bits (224), Expect = 2e-18
Identities = 43/87 (49%), Positives = 62/87 (71%)
Frame = +2
Query: 2 LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHV 181
+TV +K+R VTV GPRG LK+N +H+ ++++ +K W GS+K A +R+V S +
Sbjct: 17 VTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGSRKHNACIRSVYSII 75
Query: 182 ENMIKGVTKGFQYKMRAVYAHFPITVS 262
NMI GVT+GF+YKMR VYAHFPI ++
Sbjct: 76 NNMIIGVTQGFRYKMRLVYAHFPININ 102
>UniRef50_P05738 Cluster: 60S ribosomal protein L9-A; n=40;
Eukaryota|Rep: 60S ribosomal protein L9-A -
Saccharomyces cerevisiae (Baker's yeast)
Length = 191
Score = 103 bits (248), Expect = 2e-21
Identities = 50/87 (57%), Positives = 64/87 (73%)
Frame = +2
Query: 2 LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHV 181
+TV +KSR+V V GPRG L +N KH+ V VN +L+KV G +K +AA+RTV S V
Sbjct: 16 VTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNGGRKHVAALRTVKSLV 75
Query: 182 ENMIKGVTKGFQYKMRAVYAHFPITVS 262
+NMI GVTKG++YKMR VYAHFPI V+
Sbjct: 76 DNMITGVTKGYKYKMRYVYAHFPINVN 102
Score = 96.7 bits (230), Expect = 3e-19
Identities = 46/81 (56%), Positives = 59/81 (72%)
Frame = +1
Query: 259 VTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQ 438
V +G IE+RNFLG+K IR V + GVT+ S KDE+++ GNS+EDVS +AA +QQ
Sbjct: 104 VEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQ 163
Query: 439 STTVKNKDIRKFLDGLYVSEK 501
V+NKDIRKFLDG+YVS K
Sbjct: 164 ICRVRNKDIRKFLDGIYVSHK 184
>UniRef50_UPI0000D9FBAF Cluster: PREDICTED: similar to 60S ribosomal
protein L9, partial; n=1; Macaca mulatta|Rep: PREDICTED:
similar to 60S ribosomal protein L9, partial - Macaca
mulatta
Length = 179
Score = 98.3 bits (234), Expect = 1e-19
Identities = 45/83 (54%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Frame = +2
Query: 8 VHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RLLKVEKWFGSKKELAAVRTVCSHVE 184
V +KSR + V G G L+R F+H+ VD+++V R + VE WFG K A +RTVCSH+E
Sbjct: 80 VTLKSRHIVVSGKYGKLERTFRHIPVDMKLVEDGRKITVEMWFGLTKNKACIRTVCSHIE 139
Query: 185 NMIKGVTKGFQYKMRAVYAHFPI 253
NMI GV + +QYK+R VYAHFPI
Sbjct: 140 NMITGVRQRYQYKLRFVYAHFPI 162
>UniRef50_Q7QU08 Cluster: GLP_108_35846_36403; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_108_35846_36403 - Giardia lamblia
ATCC 50803
Length = 185
Score = 93.5 bits (222), Expect = 3e-18
Identities = 43/83 (51%), Positives = 53/83 (63%)
Frame = +2
Query: 14 VKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMI 193
+ R+VTVKG +G L R+F H +DI N + V WF K A RT+CSH+ENM
Sbjct: 19 INKRVVTVKGKKGTLVRDFSHAPLDITHANDTI-SVAVWFPRGKRNALPRTICSHIENMF 77
Query: 194 KGVTKGFQYKMRAVYAHFPITVS 262
KGVT GF+YKMR YAHFPI +
Sbjct: 78 KGVTYGFEYKMRLAYAHFPIAAT 100
Score = 88.2 bits (209), Expect = 1e-16
Identities = 43/85 (50%), Positives = 55/85 (64%)
Frame = +1
Query: 247 PHYCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAA 426
P + N IEIRNF+ + RR++ PGVT+ S KDELI+ G S+EDVS +AA
Sbjct: 96 PIAATVVDNNKAIEIRNFMHQIKTRRIECLPGVTIAMSTNVKDELILRGISIEDVSHTAA 155
Query: 427 LIQQSTTVKNKDIRKFLDGLYVSEK 501
I +S V NKD+RKFLDG YVS +
Sbjct: 156 RIHESLKVPNKDLRKFLDGCYVSSR 180
>UniRef50_Q4P4X4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 252
Score = 92.7 bits (220), Expect = 5e-18
Identities = 42/75 (56%), Positives = 56/75 (74%)
Frame = +1
Query: 286 EIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDI 465
EIRNFLGEK +R + M GVT+ QKD++++EGN ++ VS SAAL+ +T V+NKDI
Sbjct: 173 EIRNFLGEKRVRNIAMLEGVTIQEDKAQKDQVLVEGNDIDLVSQSAALLHGATLVRNKDI 232
Query: 466 RKFLDGLYVSEKTTV 510
RKFLDG+Y + K TV
Sbjct: 233 RKFLDGIYCTGKDTV 247
Score = 70.9 bits (166), Expect = 2e-11
Identities = 34/72 (47%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Frame = +2
Query: 53 VLKRNFKHLAVDIRMVNP---RLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYK 223
V +++ KH+ +D R++ + +K W +K A +RT + V NMIKGVT GFQYK
Sbjct: 92 VSQQSLKHMNLDARIIKSPAGQKIKFVVWHAGRKHAACLRTAQACVANMIKGVTVGFQYK 151
Query: 224 MRAVYAHFPITV 259
MRAVYAHFPI +
Sbjct: 152 MRAVYAHFPINI 163
>UniRef50_UPI00004985C5 Cluster: 60S ribosomal protein L9; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L9 - Entamoeba histolytica HM-1:IMSS
Length = 197
Score = 91.9 bits (218), Expect = 9e-18
Identities = 41/95 (43%), Positives = 64/95 (67%), Gaps = 9/95 (9%)
Frame = +2
Query: 2 LTVHVKSRLVTVKGPRGVLKRNFKHLAVDI-------RMVNPR--LLKVEKWFGSKKELA 154
+ + + + + V GPRG L R F+H VDI + P+ ++ ++ W+G++++ A
Sbjct: 17 VNIEINRKNIKVTGPRGSLTREFQHPKVDIYASKLVVKKEGPKENVVVIDMWYGNRRDSA 76
Query: 155 AVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPITV 259
VRT+ SH++NMI GVTKG+QYKMR VYAHFP+T+
Sbjct: 77 VVRTIASHIKNMITGVTKGYQYKMRVVYAHFPVTL 111
Score = 81.4 bits (192), Expect = 1e-14
Identities = 42/84 (50%), Positives = 57/84 (67%)
Frame = +1
Query: 259 VTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQ 438
+ +G SI +++NFLGEK R ++M GV V KDE+ +EGN +E VS SAA I
Sbjct: 113 IADDGKSI-QVQNFLGEKRTRHIEMYDGVVV--KKLGKDEICLEGNDVEKVSQSAANIHA 169
Query: 439 STTVKNKDIRKFLDGLYVSEKTTV 510
+ V+NKDIR+FLDG+YVSEK +
Sbjct: 170 ANLVRNKDIRQFLDGVYVSEKCLI 193
>UniRef50_A0DI71 Cluster: Chromosome undetermined scaffold_51, whole
genome shotgun sequence; n=6; Oligohymenophorea|Rep:
Chromosome undetermined scaffold_51, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 196
Score = 91.9 bits (218), Expect = 9e-18
Identities = 43/74 (58%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Frame = +1
Query: 283 IEIRNFLGEKYIRRVKMAPGVTVV-NSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNK 459
+EI+NFLGEK IR +K PGVT+ N ++K+ L ++GN L +VS + ALI Q+ VKNK
Sbjct: 119 VEIKNFLGEKIIRTIKCLPGVTITRNEAEEKNVLTLQGNDLNNVSLTCALIHQACAVKNK 178
Query: 460 DIRKFLDGLYVSEK 501
DIR+FLDG+YVSEK
Sbjct: 179 DIRQFLDGIYVSEK 192
Score = 77.4 bits (182), Expect = 2e-13
Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 9/91 (9%)
Frame = +2
Query: 17 KSRLVTVKGPRGVLKRNFKHLAVDIRM---VNPR------LLKVEKWFGSKKELAAVRTV 169
KS++V VKGPRG L +NF+H A+DI++ VN + + V W +K+ V +V
Sbjct: 21 KSKVVKVKGPRGELTKNFRHSALDIQVQKKVNKKNNVAKSRVSVRMWQSYRKQRCQVNSV 80
Query: 170 CSHVENMIKGVTKGFQYKMRAVYAHFPITVS 262
S + NMI+GVT G+++KM YAHFPI ++
Sbjct: 81 ASQIRNMIRGVTTGYKFKMVLAYAHFPIIIN 111
>UniRef50_Q9AW64 Cluster: 60S ribosomal protein L9; n=1; Guillardia
theta|Rep: 60S ribosomal protein L9 - Guillardia theta
(Cryptomonas phi)
Length = 188
Score = 85.4 bits (202), Expect = 8e-16
Identities = 41/79 (51%), Positives = 55/79 (69%)
Frame = +1
Query: 265 TEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQST 444
T+ S +EIRNFLGEK IR++ M GV + + +KDE+ + G+ L VS +AA IQQS
Sbjct: 105 TDDGSCLEIRNFLGEKRIRKIYMGQGVKIKKNEAKKDEISVFGSDLNLVSLNAASIQQSC 164
Query: 445 TVKNKDIRKFLDGLYVSEK 501
KNKD+RKFLDG+Y+ K
Sbjct: 165 QAKNKDLRKFLDGIYIIMK 183
Score = 69.3 bits (162), Expect = 5e-11
Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +2
Query: 8 VHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL-LKVEKWFGSKKELAAVRTVCSHVE 184
+ K+R ++ G G + R+F+ + IR + + + W KK+LA + T+ SH+
Sbjct: 18 IKTKARKISATGSLGSIIRSFEKTQISIRYFEKKKEIILLLWMAGKKQLAKLNTIASHIT 77
Query: 185 NMIKGVTKGFQYKMRAVYAHFPITVS 262
NMI GV+ GF+Y ++ +YAHFPI +S
Sbjct: 78 NMIVGVSLGFEYILQPIYAHFPINLS 103
>UniRef50_Q5JJG4 Cluster: 50S ribosomal protein L6P; n=3;
Archaea|Rep: 50S ribosomal protein L6P - Pyrococcus
kodakaraensis (Thermococcus kodakaraensis)
Length = 184
Score = 82.2 bits (194), Expect = 7e-15
Identities = 39/84 (46%), Positives = 59/84 (70%)
Frame = +2
Query: 8 VHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVEN 187
V V+ V VKGP+G L+R K+ V I + +++ + K F KK++A VRT +H+ N
Sbjct: 19 VTVEGNTVKVKGPKGELQRELKYPGVQIFTEDGKVV-IYKEFPRKKDVAIVRTFKAHINN 77
Query: 188 MIKGVTKGFQYKMRAVYAHFPITV 259
MIKGVT+GF+Y+++ VY+HFP+TV
Sbjct: 78 MIKGVTEGFKYRLKVVYSHFPMTV 101
Score = 61.7 bits (143), Expect = 1e-08
Identities = 35/81 (43%), Positives = 49/81 (60%)
Frame = +1
Query: 259 VTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQ 438
V +G+ ++ I NFLGEK RR K+ PGVTV + E+ +EG E V +AA I+Q
Sbjct: 101 VKVQGDEVV-IENFLGEKNPRRAKILPGVTV---KVKGSEIEVEGIDKEAVGQTAANIEQ 156
Query: 439 STTVKNKDIRKFLDGLYVSEK 501
+T + D R F DG+Y+ EK
Sbjct: 157 ATRITKWDRRVFQDGIYIVEK 177
>UniRef50_UPI0000DA3DDB Cluster: PREDICTED: similar to 60S ribosomal
protein L9; n=3; Euarchontoglires|Rep: PREDICTED:
similar to 60S ribosomal protein L9 - Rattus norvegicus
Length = 145
Score = 79.0 bits (186), Expect = 7e-14
Identities = 40/75 (53%), Positives = 54/75 (72%)
Frame = +1
Query: 286 EIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDI 465
++R+ + V+M GV S QKDELI+EGN E VS+SAALIQ++T V+N+DI
Sbjct: 56 KVRSVYAHFPLNVVQMRTGVACSVSQAQKDELILEGNDTELVSNSAALIQKATAVENQDI 115
Query: 466 RKFLDGLYVSEKTTV 510
RKF+DG+YVSEK T+
Sbjct: 116 RKFVDGIYVSEKGTM 130
Score = 72.1 bits (169), Expect = 8e-12
Identities = 30/43 (69%), Positives = 38/43 (88%)
Frame = +2
Query: 143 KELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPITVSPLR 271
KELA VRT+CSHV+NMIKGV+ GF+YK+R+VYAHFP+ V +R
Sbjct: 30 KELATVRTICSHVQNMIKGVSLGFRYKVRSVYAHFPLNVVQMR 72
>UniRef50_A1RXT3 Cluster: Ribosomal protein L6; n=2;
Thermoprotei|Rep: Ribosomal protein L6 - Thermofilum
pendens (strain Hrk 5)
Length = 191
Score = 75.8 bits (178), Expect = 6e-13
Identities = 37/85 (43%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Frame = +2
Query: 8 VHVKSRLVTVKGPRGVLKRNFKHLA-VDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVE 184
VHV + V V+GP G ++++F H + IR V + VE + +KK+ A V T+ S +
Sbjct: 18 VHVNGKRVEVEGPLGKVEKDFSHARRISIR-VEGNSVVVETFHATKKDYALVGTIASIIN 76
Query: 185 NMIKGVTKGFQYKMRAVYAHFPITV 259
NMI GVTKG++YK++ VYAHFP+++
Sbjct: 77 NMIIGVTKGYRYKLKIVYAHFPMSL 101
Score = 38.3 bits (85), Expect = 0.12
Identities = 23/59 (38%), Positives = 35/59 (59%)
Frame = +1
Query: 283 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNK 459
I I NFLGE+ R + PG V +KD++I+EG L+ V+ +AA I +T ++ K
Sbjct: 108 IIIENFLGERGKRIAGIMPGAKV---KIEKDDVIVEGIDLDAVAQTAANIHLATHLRGK 163
>UniRef50_Q8U015 Cluster: 50S ribosomal protein L6P; n=14;
Euryarchaeota|Rep: 50S ribosomal protein L6P -
Pyrococcus furiosus
Length = 184
Score = 75.4 bits (177), Expect = 8e-13
Identities = 37/84 (44%), Positives = 55/84 (65%)
Frame = +2
Query: 8 VHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVEN 187
V V+ V VKGP+G L+R F + I + ++ + K F +K++A RT +H+ N
Sbjct: 19 VTVEGYKVKVKGPKGELEREFFWPGIQIFTEDGNVV-IYKDFPRRKDVAIARTFAAHIRN 77
Query: 188 MIKGVTKGFQYKMRAVYAHFPITV 259
MIKGVT+GF YK++ VY+HFPI+V
Sbjct: 78 MIKGVTEGFTYKLKVVYSHFPISV 101
Score = 63.3 bits (147), Expect = 4e-09
Identities = 36/81 (44%), Positives = 50/81 (61%)
Frame = +1
Query: 259 VTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQ 438
V +G+ +I I NFLGEK R+ K+ PGVTV + E+I+EG E V +AA I+Q
Sbjct: 101 VKVQGDEVI-IENFLGEKAPRKAKILPGVTV---KVRGQEIIVEGIDKEAVGQTAANIEQ 156
Query: 439 STTVKNKDIRKFLDGLYVSEK 501
+T + D R F DG+Y+ EK
Sbjct: 157 ATRITKWDRRIFQDGIYIVEK 177
>UniRef50_UPI0001554F35 Cluster: PREDICTED: similar to Chain A,
Solution Structure Of The N-Terminal Domain Of Human
Ribosomal Protein L9; n=1; Ornithorhynchus anatinus|Rep:
PREDICTED: similar to Chain A, Solution Structure Of The
N-Terminal Domain Of Human Ribosomal Protein L9 -
Ornithorhynchus anatinus
Length = 143
Score = 73.3 bits (172), Expect = 3e-12
Identities = 34/68 (50%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
Frame = +2
Query: 14 VKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLK--VEKWFGSKKELAAVRTVCSHVEN 187
+K R V VKGP+G L R+F H+ V++ ++ +L K V+KW+G++KELA V T+CS V+N
Sbjct: 20 LKGRTVIVKGPQGSLHRDFNHINVELSLLGKKLKKFHVDKWWGNRKELATVHTICSPVQN 79
Query: 188 MIKGVTKG 211
IK VT G
Sbjct: 80 TIKWVTLG 87
>UniRef50_Q8SSF7 Cluster: 60S RIBOSOMAL PROTEIN L9; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L9 -
Encephalitozoon cuniculi
Length = 204
Score = 72.1 bits (169), Expect = 8e-12
Identities = 35/78 (44%), Positives = 50/78 (64%)
Frame = +1
Query: 268 EGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTT 447
E I+ ++NFLGEK ++R +M G V ++KD ++IEG SL DVS SA I
Sbjct: 124 EDGKILLVKNFLGEKNVKRFRMR-GAARVRLDERKDTIVIEGPSLSDVSQSAGTITNECK 182
Query: 448 VKNKDIRKFLDGLYVSEK 501
KN+D R FLDG++V+E+
Sbjct: 183 AKNRDSRVFLDGIFVTER 200
Score = 54.8 bits (126), Expect = 1e-06
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Frame = +2
Query: 5 TVHVKSRLVTVKGPRG-VLKRNFKH-LAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSH 178
T + ++ T +GP+G +++ +H L DI N +++ W G +K +A TV S
Sbjct: 37 TATQEGKIFTFQGPKGSIVEDCTRHPLTFDIHEGN---IRIRLWNGKRKAMALAITVESL 93
Query: 179 VENMIKGVTKGFQYKMRAVYAHFPITV 259
+ N IK VT GF Y M+AVY HF I +
Sbjct: 94 LRNAIKAVTVGFAYTMKAVYNHFSINM 120
>UniRef50_A0RVY9 Cluster: Ribosomal protein L6P/L9E; n=1;
Cenarchaeum symbiosum|Rep: Ribosomal protein L6P/L9E -
Cenarchaeum symbiosum
Length = 165
Score = 68.5 bits (160), Expect = 9e-11
Identities = 36/85 (42%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Frame = +1
Query: 250 HYCVTT-EGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAA 426
H+ +T + ++I + NF GE+ R+ K+ G VV+ + +++I+ G+ L DVS +AA
Sbjct: 80 HFPITIKQDGAMILVENFQGERSARKAKIVGGTKVVS---KGEDVIVTGHVLTDVSQTAA 136
Query: 427 LIQQSTTVKNKDIRKFLDGLYVSEK 501
++Q T VKNKD R FLDG+YV EK
Sbjct: 137 NLEQGTKVKNKDHRVFLDGVYVYEK 161
Score = 55.2 bits (127), Expect = 9e-07
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +2
Query: 23 RLVTVKGPRGVLKRNFKHLAVDIRMVNPRL-LKVEKWFGSKKELAAVRTVCSHVENMIKG 199
R++ VKG G ++F+ + V IR+ + LK E K++LA + T S V N+ +G
Sbjct: 8 RMLHVKGKLGSAHKSFRKIPVGIRIDGSSVVLKAEGT--RKRDLAILNTARSIVRNLCEG 65
Query: 200 VTKGFQYKMRAVYAHFPITV 259
V G+ K++ VYAHFPIT+
Sbjct: 66 VGVGYTIKLKVVYAHFPITI 85
>UniRef50_Q74MR6 Cluster: 50S ribosomal protein L6P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L6P -
Nanoarchaeum equitans
Length = 192
Score = 63.7 bits (148), Expect = 3e-09
Identities = 27/84 (32%), Positives = 51/84 (60%)
Frame = +2
Query: 8 VHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVEN 187
V ++ ++ V GP+G ++R F H + + VN + +E +F +++E + T SH++N
Sbjct: 18 VSYENNILKVSGPKGEVERKFYHPLIKLS-VNDNKIILETYFATRREKRLINTWRSHIKN 76
Query: 188 MIKGVTKGFQYKMRAVYAHFPITV 259
M++GV F Y+++ Y HFP+ V
Sbjct: 77 MLEGVQNPFVYRLKVCYTHFPMRV 100
Score = 47.2 bits (107), Expect = 3e-04
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Frame = +1
Query: 259 VTTEGNSIIEIRNFLGEK--YIRRVKMAPGVTV-VNSPKQKDELIIEGNSLEDVSSSAAL 429
V EGN +I + NFLGEK I+ + V V + K + E+++E E A++
Sbjct: 100 VKLEGNKLI-VENFLGEKAPIIKELPYLDKVKVKIEQNKDETEIVVESPDKEKAGIVASM 158
Query: 430 IQQSTTV--KNKDIRKFLDGLYVSEK 501
I+QST K KD R+F DG+++ K
Sbjct: 159 IEQSTRFLHKRKDRRRFTDGIWLYYK 184
>UniRef50_Q3LWE8 Cluster: Ribosomal protein L9; n=1; Bigelowiella
natans|Rep: Ribosomal protein L9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 190
Score = 63.3 bits (147), Expect = 4e-09
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Frame = +2
Query: 8 VHVKSRLVTVKGPRGVLKRNFKHLAVDI--RMVNPRLLKVEKWFGSKKELAAVRTVCSHV 181
+ +K + + KG G L + F + V+I + + L V ++ +K A VRT+ S +
Sbjct: 18 IRIKEKTIYTKGINGELSKKFNNKNVNIIYKKNDSNSLIVRCYYNNKSSSAIVRTITSII 77
Query: 182 ENMIKGVTKGFQYKMRAVYAHFPITV 259
NMI GV+KGF Y ++ VY+HFPI+V
Sbjct: 78 YNMIIGVSKGFTYLLKIVYSHFPISV 103
Score = 49.6 bits (113), Expect = 5e-05
Identities = 24/78 (30%), Positives = 41/78 (52%)
Frame = +1
Query: 268 EGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTT 447
+ + +EI N G K I + V V + K E+I+ +E + ++LIQ +
Sbjct: 107 QNENTLEITNLFGLKRIDSFFIPSSVQVCTNNLNKKEIILLSKDIETLGILSSLIQNKCS 166
Query: 448 VKNKDIRKFLDGLYVSEK 501
+ NKD R F+DG+Y++ K
Sbjct: 167 INNKDCRVFIDGIYLASK 184
>UniRef50_Q8PV34 Cluster: 50S ribosomal protein L6P; n=4;
Methanomicrobia|Rep: 50S ribosomal protein L6P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 176
Score = 63.3 bits (147), Expect = 4e-09
Identities = 31/86 (36%), Positives = 53/86 (61%)
Frame = +2
Query: 2 LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHV 181
++V + + T KGP+G ++R F + + I + ++ V+ K++ A V T SH+
Sbjct: 15 VSVSLSQDVFTAKGPKGTVERTFWYPGIKIEVREGEVV-VDAESSRKEQKAMVGTFASHL 73
Query: 182 ENMIKGVTKGFQYKMRAVYAHFPITV 259
+N+I GV++GF+ KM VYAHFP+ V
Sbjct: 74 KNLIIGVSEGFECKMNIVYAHFPMQV 99
Score = 53.6 bits (123), Expect = 3e-06
Identities = 33/81 (40%), Positives = 48/81 (59%)
Frame = +1
Query: 259 VTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQ 438
V EG +++ I NFLGEK R K+ G T V +E+++ G + EDV +AA I+Q
Sbjct: 99 VKVEGKTLV-IGNFLGEKKPRIAKIL-GETKVKV--SGNEIVVSGINKEDVGQTAANIEQ 154
Query: 439 STTVKNKDIRKFLDGLYVSEK 501
T +K D R F DG+Y+ +K
Sbjct: 155 KTKIKRFDPRIFQDGIYIVQK 175
>UniRef50_A2GN76 Cluster: Ribosomal protein L6, putative; n=2;
Trichomonas vaginalis G3|Rep: Ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 197
Score = 62.9 bits (146), Expect = 5e-09
Identities = 35/84 (41%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +1
Query: 244 LPHYCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTV-VNSPKQKDELIIEGNSLEDVSSS 420
+ H C +E + F+G K + V GV + N KDE+ IEG +LEDVS
Sbjct: 107 IKHTC--SEDGRTFDFNGFMGHKEHKIVTAPEGVRIWSNESVAKDEINIEGANLEDVSLV 164
Query: 421 AALIQQSTTVKNKDIRKFLDGLYV 492
I Q T +K+KD+RKFLDG+YV
Sbjct: 165 CGQIHQLTKIKDKDLRKFLDGIYV 188
Score = 60.1 bits (139), Expect = 3e-08
Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 7/87 (8%)
Frame = +2
Query: 14 VKSRLVTVK--GPR----GVLKRNFKHLAVDIRM-VNPRLLKVEKWFGSKKELAAVRTVC 172
VKS +VT++ P+ L ++ HL +D N + WFG++K LA + T+
Sbjct: 21 VKSGVVTIEHQDPKDKKTSKLVKDLSHLKLDFEYDENDHQIVARCWFGNRKLLARIGTLF 80
Query: 173 SHVENMIKGVTKGFQYKMRAVYAHFPI 253
V+NMI GVT G++YKM VY+HFPI
Sbjct: 81 GIVKNMITGVTLGWRYKMHFVYSHFPI 107
>UniRef50_A3CT13 Cluster: 50S ribosomal protein L6P; n=2;
Methanomicrobiales|Rep: 50S ribosomal protein L6P -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 174
Score = 62.5 bits (145), Expect = 6e-09
Identities = 30/76 (39%), Positives = 48/76 (63%)
Frame = +2
Query: 26 LVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVT 205
++TV GP+G L R+ + +D+ MV + V K+ LA T+ +H +NMI+GV
Sbjct: 21 VLTVSGPKGTLVRDMRFPQIDL-MVEGGEVVVSTASEKKRILAMTGTLEAHAKNMIRGVA 79
Query: 206 KGFQYKMRAVYAHFPI 253
G++Y+M+ VY+HFPI
Sbjct: 80 DGYEYRMKVVYSHFPI 95
Score = 57.2 bits (132), Expect = 2e-07
Identities = 33/78 (42%), Positives = 47/78 (60%)
Frame = +1
Query: 268 EGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTT 447
+GN + EI NFLGEK R K+ GVTV DE+ I G E V ++AA I+ +T
Sbjct: 100 QGNRL-EITNFLGEKQPRIAKIIEGVTVKIG---NDEVTITGIDKEKVGNTAANIEHATR 155
Query: 448 VKNKDIRKFLDGLYVSEK 501
+ +D R F DG+Y++E+
Sbjct: 156 ITKRDPRVFQDGIYITER 173
>UniRef50_Q673R2 Cluster: 50S ribosomal protein L6P; n=2;
environmental samples|Rep: 50S ribosomal protein L6P -
uncultured marine group II euryarchaeote DeepAnt-JyKC7
Length = 188
Score = 62.1 bits (144), Expect = 8e-09
Identities = 33/86 (38%), Positives = 49/86 (56%)
Frame = +2
Query: 2 LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHV 181
+T V VTV L R F+H +++R + L +V KKE A T +H+
Sbjct: 17 VTAAVNGNDVTVAKDGNSLTREFRHPRIEVRDSSGEL-EVFVNLPRKKEKALAGTWAAHL 75
Query: 182 ENMIKGVTKGFQYKMRAVYAHFPITV 259
NM +GV GF+YK++AVY+HFP+T+
Sbjct: 76 TNMARGVDSGFEYKLKAVYSHFPMTI 101
Score = 44.0 bits (99), Expect = 0.002
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +1
Query: 259 VTTEGNSIIEIRNFLGEKYIRRVKMAPG--VTVVNSPKQKDELIIEGNSLEDVSSSAALI 432
+ GN + + N GEK + RV P V + K ++ + G E V +AA I
Sbjct: 101 IRVNGNQMT-VTNLFGEK-VPRVAALPWSPAEVEVKVQNKTDVTVSGADREKVGQTAANI 158
Query: 433 QQSTTVKNKDIRKFLDGLYVSEK 501
++S +KN+D R F DG+Y+ K
Sbjct: 159 ERSCRIKNRDRRVFQDGIYIVSK 181
>UniRef50_O05637 Cluster: 50S ribosomal protein L6P; n=8;
Thermoprotei|Rep: 50S ribosomal protein L6P - Sulfolobus
acidocaldarius
Length = 189
Score = 59.7 bits (138), Expect = 4e-08
Identities = 27/76 (35%), Positives = 49/76 (64%)
Frame = +1
Query: 283 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKD 462
+++ N +GEK IRR K+ PGV V + +++++EG+ + +V+ +AA I+ ST + D
Sbjct: 111 VQVSNLIGEKNIRRAKILPGVKVT---VKGEDIVVEGSDIYNVAQTAANIESSTKIVGYD 167
Query: 463 IRKFLDGLYVSEKTTV 510
R F DG+Y+ +K +
Sbjct: 168 RRIFSDGIYIYKKEVI 183
Score = 57.6 bits (133), Expect = 2e-07
Identities = 26/85 (30%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Frame = +2
Query: 8 VHVKSRLVTVKGPRGVLKRNFKHLAVDIRM-VNPRLLKVEKWFGSKKELAAVRTVCSHVE 184
V +++ ++ VKGP+G + ++F + A IR+ +N + +E F +++ A + ++ +H++
Sbjct: 21 VSLENNVLKVKGPKGEVIKDFSY-AKGIRIQLNEGKIILETTFADRRKKALLYSIIAHIK 79
Query: 185 NMIKGVTKGFQYKMRAVYAHFPITV 259
NMI G G++Y ++ + HFPI+V
Sbjct: 80 NMITGTINGYRYYLKVISTHFPISV 104
>UniRef50_O28370 Cluster: 50S ribosomal protein L6P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L6P -
Archaeoglobus fulgidus
Length = 196
Score = 58.4 bits (135), Expect = 1e-07
Identities = 30/73 (41%), Positives = 43/73 (58%)
Frame = +2
Query: 41 GPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQY 220
GP+G R K+ V I + + ++ +V KK A V T H+EN+I GV +GF+Y
Sbjct: 48 GPKGENTRYLKYRGVFIEVGDGKV-RVYTTSPKKKHKAMVGTFAGHIENLITGVKEGFEY 106
Query: 221 KMRAVYAHFPITV 259
++ VYAHFPI V
Sbjct: 107 HLKVVYAHFPIKV 119
Score = 58.4 bits (135), Expect = 1e-07
Identities = 31/81 (38%), Positives = 49/81 (60%)
Frame = +1
Query: 259 VTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQ 438
V EGN +I I NF+GEK+ RR K+ V S + ++ + G +E+ +AA ++Q
Sbjct: 119 VRVEGNEVI-IENFIGEKHPRRAKIVGRAQVEISGQ---DIYVRGIDIEECGQTAANLEQ 174
Query: 439 STTVKNKDIRKFLDGLYVSEK 501
+T +K KD R F DG+Y+ +K
Sbjct: 175 ATKIKRKDPRVFQDGIYIVKK 195
>UniRef50_Q8ZVA7 Cluster: 50S ribosomal protein L6P; n=5;
Thermoproteaceae|Rep: 50S ribosomal protein L6P -
Pyrobaculum aerophilum
Length = 196
Score = 58.0 bits (134), Expect = 1e-07
Identities = 27/78 (34%), Positives = 50/78 (64%)
Frame = +2
Query: 26 LVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVT 205
+V VKGP G + + FK+ V + + + +++ +E + K+E A + T ++NM GVT
Sbjct: 29 IVKVKGPLGEVTKEFKNTPVVMSLQDGKIV-MEVFKARKREYAILGTYKGILKNMFLGVT 87
Query: 206 KGFQYKMRAVYAHFPITV 259
+G++YK++ +Y HFP+ V
Sbjct: 88 RGWRYKLKVIYTHFPMLV 105
>UniRef50_A7DSX9 Cluster: Ribosomal protein L6; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L6
- Candidatus Nitrosopumilus maritimus SCM1
Length = 185
Score = 56.4 bits (130), Expect = 4e-07
Identities = 34/81 (41%), Positives = 48/81 (59%)
Frame = +1
Query: 259 VTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQ 438
V EG I+ I NF GE+ R + V+ PK +D +++ G D++ +AA I+
Sbjct: 103 VKVEGKKIL-IENFQGERAPRSTHIMGNTKVI--PKGED-VLLTGEVWTDITQTAANIEL 158
Query: 439 STTVKNKDIRKFLDGLYVSEK 501
+T VKNKD R FLDG+YV EK
Sbjct: 159 TTKVKNKDHRVFLDGIYVYEK 179
Score = 55.2 bits (127), Expect = 9e-07
Identities = 26/86 (30%), Positives = 51/86 (59%)
Frame = +2
Query: 2 LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHV 181
+TV ++ +GP G +NF+++ V I + + ++ ++ K++ A + T S +
Sbjct: 19 VTVTQNKNMLLFEGPLGKTHKNFRNIPVKIEIADGKV-NLKTIGERKRDYAILHTARSII 77
Query: 182 ENMIKGVTKGFQYKMRAVYAHFPITV 259
N+ +G+ +G+ KM+ V+AHFPITV
Sbjct: 78 RNICEGLVEGYTIKMKVVFAHFPITV 103
>UniRef50_P14135 Cluster: 50S ribosomal protein L6P; n=5;
Halobacteriaceae|Rep: 50S ribosomal protein L6P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 178
Score = 56.0 bits (129), Expect = 5e-07
Identities = 33/81 (40%), Positives = 48/81 (59%)
Frame = +1
Query: 259 VTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQ 438
V EG+ ++ I NFLGEK RR + G T V +EL + G +E V +AA I+Q
Sbjct: 96 VNVEGDEVV-IENFLGEKAPRRTTIH-GDTDVEI--DGEELTVSGPDIEAVGQTAADIEQ 151
Query: 439 STTVKNKDIRKFLDGLYVSEK 501
T + +KD+R F DG+Y++ K
Sbjct: 152 LTRINDKDVRVFQDGVYITRK 172
Score = 55.2 bits (127), Expect = 9e-07
Identities = 26/78 (33%), Positives = 46/78 (58%)
Frame = +2
Query: 29 VTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTK 208
+TV+G G + R + +D+ V+ + +E + K ++ + T SH+ENM GVT+
Sbjct: 21 ITVEGDNGSVTRRLWYPDIDVS-VDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTE 79
Query: 209 GFQYKMRAVYAHFPITVS 262
G++Y M Y+HFP+ V+
Sbjct: 80 GWEYGMEVFYSHFPMQVN 97
>UniRef50_Q8TW14 Cluster: 50S ribosomal protein L6P; n=3; cellular
organisms|Rep: 50S ribosomal protein L6P - Methanopyrus
kandleri
Length = 204
Score = 55.2 bits (127), Expect = 9e-07
Identities = 25/74 (33%), Positives = 49/74 (66%)
Frame = +2
Query: 29 VTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTK 208
VTVKGP+G + + F + V + + + ++ + ++++ A + + +++ENM KGVT+
Sbjct: 43 VTVKGPKGEVTKEFYYPDVYLWVEDDEVV-IAATRSNRRQKAILGMIKAYIENMQKGVTE 101
Query: 209 GFQYKMRAVYAHFP 250
G +YK++ VY+HFP
Sbjct: 102 GHEYKLKLVYSHFP 115
>UniRef50_UPI000021E22B Cluster: PREDICTED: similar to ribosomal
protein L9; n=2; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein L9 - Rattus norvegicus
Length = 77
Score = 54.0 bits (124), Expect = 2e-06
Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Frame = +2
Query: 20 SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL--LKVEKWFGSKKELAAVRTVCSHVENMI 193
+ +V VK RG L+R+F H+ +++R++ R L+V+KW + K LA T+ SHV+NMI
Sbjct: 16 AHIVIVKDTRGTLQRDFNHINIELRLLAKRKKQLQVDKWLKTMK-LATAHTIYSHVQNMI 74
Query: 194 KGV 202
K V
Sbjct: 75 KRV 77
>UniRef50_Q97BW0 Cluster: 50S ribosomal protein L6P; n=1;
Thermoplasma volcanium|Rep: 50S ribosomal protein L6P -
Thermoplasma volcanium
Length = 178
Score = 51.2 bits (117), Expect = 2e-05
Identities = 22/56 (39%), Positives = 35/56 (62%)
Frame = +2
Query: 95 MVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPITVS 262
+V +K+ K + +E V T S + NM+KG+ +GFQY+M+ Y+HFP+ VS
Sbjct: 46 LVEDNKIKIVKSKNNSRERGIVGTWASEISNMVKGLKEGFQYEMKIDYSHFPMRVS 101
>UniRef50_Q5AEN3 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 140
Score = 50.8 bits (116), Expect = 2e-05
Identities = 33/76 (43%), Positives = 43/76 (56%)
Frame = -2
Query: 495 RYIKTIQELSDILILDCSRLLNESSRARDIFQRVAFND*FILLFWRVNDSHTRCHLYPSD 316
R I TIQE +DIL+ D + LLN SS R+ FQ V N+ FILL R T S+
Sbjct: 27 RNINTIQEFTDILVSDTTDLLNISSILRNSFQGVTRNNQFILLSRRNFHGDTFMDFNFSN 86
Query: 315 VFLTQEVTYLNN*ITL 268
F TQE++ N +T+
Sbjct: 87 SFFTQEISNFNVILTI 102
>UniRef50_A0BWM5 Cluster: Chromosome undetermined scaffold_132,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_132,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 167
Score = 46.4 bits (105), Expect = 4e-04
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 9/72 (12%)
Frame = +2
Query: 23 RLVTVKGPRGVLKRNFKHLAVDIRMVNP-------RLLKVE--KWFGSKKELAAVRTVCS 175
+L+ + GPRG+L RNFKH ++DI++ L+K+E K+ V+++ +
Sbjct: 53 KLIMIIGPRGILNRNFKHASLDIQVQKEIKEIKQIGLIKIEYQDVVQYSKQRFQVKSIAA 112
Query: 176 HVENMIKGVTKG 211
++NMI+G+T G
Sbjct: 113 QIKNMIRGITSG 124
Score = 39.5 bits (88), Expect = 0.050
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +1
Query: 340 GVTVVNSP-KQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIR 468
GV + ++K+ LI+ N L +VS + ALI Q+ VKNKDIR
Sbjct: 124 GVVITRKEAEEKNVLILSANDLNNVSLTCALIHQACAVKNKDIR 167
>UniRef50_Q6L1B1 Cluster: 50S ribosomal protein L6P; n=3;
Thermoplasmatales|Rep: 50S ribosomal protein L6P -
Picrophilus torridus
Length = 180
Score = 44.0 bits (99), Expect = 0.002
Identities = 25/78 (32%), Positives = 43/78 (55%)
Frame = +1
Query: 259 VTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQ 438
V+ G+ +I + NFLGEK R K+ G V + D + I G + +AA I++
Sbjct: 100 VSVRGDKLI-VENFLGEKSPRSAKIVDGCKV---SVKGDRITINGIDKRKIGETAANIER 155
Query: 439 STTVKNKDIRKFLDGLYV 492
+T +++ D R F DG+++
Sbjct: 156 ATYIRHFDARVFQDGIFL 173
Score = 41.5 bits (93), Expect = 0.012
Identities = 25/76 (32%), Positives = 38/76 (50%)
Frame = +2
Query: 35 VKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGF 214
+KG G R F+ V + +K+ +K V T S + +I+GVTKGF
Sbjct: 27 IKGKLGEASRIFRDNYVKA-YIEGSSVKIATSKNNKYTKGIVGTWYSETKLLIEGVTKGF 85
Query: 215 QYKMRAVYAHFPITVS 262
+Y M+ + HFP+ VS
Sbjct: 86 EYHMKIDFTHFPMRVS 101
>UniRef50_A4M9T7 Cluster: 50S ribosomal protein L6; n=3;
Thermotogaceae|Rep: 50S ribosomal protein L6 - Petrotoga
mobilis SJ95
Length = 186
Score = 41.9 bits (94), Expect = 0.009
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Frame = +2
Query: 14 VKSRLVTVKGPRGVLKRNF-KHLAVDIRMVNPRLLK----VEKWFGSKKELAAVR-TVCS 175
V + + +KG G L N ++L VD R N ++K V K +K L A+R T S
Sbjct: 21 VDGQTIKIKGKNGELSLNLPEYLEVD-RDNNELMIKTKEGVVKRSSDEKRLKALRGTFTS 79
Query: 176 HVENMIKGVTKGFQYKM 226
HV NMIKGVT+G++ ++
Sbjct: 80 HVRNMIKGVTEGYKKEL 96
>UniRef50_Q661C7 Cluster: 50S ribosomal protein L6; n=9; cellular
organisms|Rep: 50S ribosomal protein L6 - Borrelia
garinii
Length = 180
Score = 41.9 bits (94), Expect = 0.009
Identities = 25/69 (36%), Positives = 41/69 (59%)
Frame = +2
Query: 8 VHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVEN 187
+ VK LV V+G RG L ++ K ++++++ N ++ V + F KK A S + N
Sbjct: 17 IDVKGNLVIVEGTRGKLVQDIKD-SINVKVENGSVI-VNRAFNDKKTKAYHGLYRSLIFN 74
Query: 188 MIKGVTKGF 214
M+KGVT+GF
Sbjct: 75 MVKGVTEGF 83
>UniRef50_Q8ETW8 Cluster: 50S ribosomal protein L6; n=40;
Bacteria|Rep: 50S ribosomal protein L6 - Oceanobacillus
iheyensis
Length = 178
Score = 40.7 bits (91), Expect = 0.022
Identities = 25/69 (36%), Positives = 37/69 (53%)
Frame = +2
Query: 29 VTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTK 208
VTVKGP+G L R H + I + +L VE+ K+ A T S + NM+ GV+K
Sbjct: 24 VTVKGPKGELSREL-HPDMKIN-IEDNVLTVERPSDHKEHRALHGTTRSLINNMVIGVSK 81
Query: 209 GFQYKMRAV 235
GF+ + +
Sbjct: 82 GFEKSLEII 90
>UniRef50_P46898 Cluster: 50S ribosomal protein L6; n=7;
Bacilli|Rep: 50S ribosomal protein L6 - Bacillus
subtilis
Length = 179
Score = 40.7 bits (91), Expect = 0.022
Identities = 26/69 (37%), Positives = 39/69 (56%)
Frame = +2
Query: 29 VTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTK 208
V VKGP+G L R F H ++I+ V +L V + K+ A T S + NM++GV+K
Sbjct: 25 VAVKGPKGELTRTF-HPDMEIK-VEDNVLTVARPSDQKEHRALHGTTRSLLGNMVEGVSK 82
Query: 209 GFQYKMRAV 235
GF+ + V
Sbjct: 83 GFERGLELV 91
>UniRef50_Q8R7W9 Cluster: 50S ribosomal protein L6; n=22;
Bacteria|Rep: 50S ribosomal protein L6 -
Thermoanaerobacter tengcongensis
Length = 180
Score = 40.3 bits (90), Expect = 0.029
Identities = 24/70 (34%), Positives = 41/70 (58%)
Frame = +2
Query: 26 LVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVT 205
+VTVKG +G L++ F + V+I + + ++ K K+E A T + + NM+KGVT
Sbjct: 24 VVTVKGAKGTLEKKFPPI-VNIEVRDGEVVVTRKG-DDKEERAMHGTTRAIIANMVKGVT 81
Query: 206 KGFQYKMRAV 235
+GF+ + V
Sbjct: 82 EGFEKALEIV 91
>UniRef50_Q48D51 Cluster: 50S ribosomal protein L6; n=6;
Proteobacteria|Rep: 50S ribosomal protein L6 -
Pseudomonas syringae pv. phaseolicola (strain 1448A /
Race 6)
Length = 179
Score = 40.3 bits (90), Expect = 0.029
Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +2
Query: 8 VHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPR-LLKVEKWFGSKKELAAVRTVCSHVE 184
V + +L++VKGP+G L+ H +V++ +V L+ G ++ A T + V
Sbjct: 17 VKLVGQLLSVKGPKGTLELII-HSSVEVEIVEEAGELRFAARNGDQQTRAMAGTTRALVN 75
Query: 185 NMIKGVTKGFQYKMRAV 235
NM++GV++GF+ K++ V
Sbjct: 76 NMVQGVSQGFERKLQLV 92
>UniRef50_Q9ZI38 Cluster: 50S ribosomal protein L6; n=2; Aquifex
pyrophilus|Rep: 50S ribosomal protein L6 - Aquifex
pyrophilus
Length = 187
Score = 38.3 bits (85), Expect = 0.12
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +2
Query: 17 KSRLVTVKGPRGVLKRNFKHLAVDIRM-VNPRLLKVEKWFGSKKELAAVRTVCSHVENMI 193
K VTV+GP+G L+ N H + + + R +K+++ A T+ + ++NMI
Sbjct: 22 KEHKVTVEGPKGKLELNI-HPDIKVTLNQQERWIKLDRPSDRSFHKAIHGTMAALIKNMI 80
Query: 194 KGVTKGF 214
KGVT+GF
Sbjct: 81 KGVTEGF 87
>UniRef50_Q9ZAE4 Cluster: 50S ribosomal protein L6; n=4; cellular
organisms|Rep: 50S ribosomal protein L6 - Thermotoga
maritima
Length = 184
Score = 37.9 bits (84), Expect = 0.15
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Frame = +2
Query: 2 LTVHVKSRLVTVKGPRGVLKRNF-KHLAVDIR----MVNPRLLKVEKWFGSKKELAAVRT 166
+TV +K +V VKGP+G L + F ++ +++ V P ++ + +K T
Sbjct: 15 VTVEIKDNVVKVKGPKGELSQEFLPYVKIEVEGNEVWVRPNEEQIIRKSDWRKVKMFQGT 74
Query: 167 VCSHVENMIKGVTKGFQYKMRAV 235
S + NM+ GVT+G++ ++ V
Sbjct: 75 YWSLIRNMVVGVTEGYKKELEIV 97
>UniRef50_A5GIT1 Cluster: 50S ribosomal protein L6; n=7;
Bacteria|Rep: 50S ribosomal protein L6 - Synechococcus
sp. (strain WH7803)
Length = 179
Score = 37.5 bits (83), Expect = 0.20
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +2
Query: 2 LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVC-SH 178
++V + VTVKGP+G LKR V + V+ ++ K++ +C +
Sbjct: 15 VSVSLDGLAVTVKGPKGELKRTLPD-GVTVNQVDNTIVVAPT--SEKRQSRERHGLCRTL 71
Query: 179 VENMIKGVTKGFQYKMRAV 235
V NMI+GV+KG+ K+ V
Sbjct: 72 VANMIEGVSKGYSKKLEIV 90
>UniRef50_Q2JIL3 Cluster: 50S ribosomal protein L6; n=44; cellular
organisms|Rep: 50S ribosomal protein L6 - Synechococcus
sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria
bacteriumYellowstone B-Prime)
Length = 181
Score = 36.7 bits (81), Expect = 0.35
Identities = 22/96 (22%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Frame = +2
Query: 8 VHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVC-SHVE 184
+ + + + VKGP+G L R+ L + ++ N ++L V + + + +C + V
Sbjct: 17 IQIDGQHIAVKGPKGQLSRSLPPL-ITVQQ-NAQMLTVSR-LNDSRPARQLHGLCRTLVA 73
Query: 185 NMIKGVTKGFQYKMRAVYAHFPITVSPLRVIQLLRY 292
NM+ GV+KGF+ ++ V + + +++ + Y
Sbjct: 74 NMVDGVSKGFERRLELVGVGYRAAIQGSKLVLNVGY 109
>UniRef50_Q7VQD3 Cluster: 50S ribosomal subunit protein L6; n=2;
Candidatus Blochmannia|Rep: 50S ribosomal subunit
protein L6 - Blochmannia floridanus
Length = 181
Score = 35.9 bits (79), Expect = 0.62
Identities = 21/86 (24%), Positives = 43/86 (50%)
Frame = +2
Query: 2 LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHV 181
+ + ++ + V G G L F H + ++ N + L V + + A + T CS +
Sbjct: 17 IQITIQDCCILVVGVLGNLSYKF-HNFIGVQFSNVKNLIVYSRYRNHVNRALLGTTCSLI 75
Query: 182 ENMIKGVTKGFQYKMRAVYAHFPITV 259
+MI GVT+GF K++ + + +++
Sbjct: 76 NSMIVGVTEGFVKKLQLIGIGYRVSI 101
>UniRef50_Q6KI40 Cluster: 50S ribosomal protein l6; n=4;
Mycoplasma|Rep: 50S ribosomal protein l6 - Mycoplasma
mobile
Length = 179
Score = 35.5 bits (78), Expect = 0.82
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +2
Query: 8 VHVKSRLVTVKGPRGVLKRNFKHL-AVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVE 184
+++K+ LV +KG GVL N L A+++ + ++ + +K+ ++ +E
Sbjct: 17 LNIKNNLVEIKGKLGVLTFNVNPLIAIEVENHEVKTIRANEEKHTKQLHGTTNSI---IE 73
Query: 185 NMIKGVTKGFQYKM 226
NMI GV+KGF+ ++
Sbjct: 74 NMIIGVSKGFKKEL 87
>UniRef50_O67565 Cluster: 50S ribosomal protein L6; n=1; Aquifex
aeolicus|Rep: 50S ribosomal protein L6 - Aquifex
aeolicus
Length = 183
Score = 35.5 bits (78), Expect = 0.82
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +2
Query: 17 KSRLVTVKGPRGVLKRNFKHLAVDIRM-VNPRLLKVEKWFGSKKELAAVRTVCSHVENMI 193
K + V+GP+G L+ N H + + + R +K+++ A T+ + V+NMI
Sbjct: 22 KEHKIVVEGPKGKLELNV-HPDIKVTVNQQERWIKLDRPTDRSFHKAIHGTMAALVKNMI 80
Query: 194 KGVTKGF 214
KGVT+GF
Sbjct: 81 KGVTEGF 87
>UniRef50_Q8KAI6 Cluster: 50S ribosomal protein L6; n=15;
Bacteria|Rep: 50S ribosomal protein L6 - Chlorobium
tepidum
Length = 179
Score = 35.1 bits (77), Expect = 1.1
Identities = 24/73 (32%), Positives = 35/73 (47%)
Frame = +2
Query: 8 VHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVEN 187
V VK ++ V GP+G L + I V + V++ SK+ A V N
Sbjct: 17 VEVKENMINVTGPKGALSQALVDEV--IVSVADGAVTVQRKDDSKRARAMHGLYRMLVSN 74
Query: 188 MIKGVTKGFQYKM 226
M++GVTKGF K+
Sbjct: 75 MVEGVTKGFTRKL 87
>UniRef50_UPI0000DA368E Cluster: PREDICTED: similar to 60S ribosomal
protein L9; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to 60S ribosomal protein L9 - Rattus norvegicus
Length = 92
Score = 34.7 bits (76), Expect = 1.4
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = +1
Query: 160 EDSLFTCREHD*RSN*RLPIQDACCVCSLPHYCVTTEGNSIIEIRNFLGEKYIRRVKMAP 339
++ L +C EHD + ++ P + E S+IE + +G+KYI RV++
Sbjct: 20 QNHLQSCSEHD-QGGFHYRMRSV--YAGFPTNVIIQENGSVIEHWSAMGKKYIHRVQIRT 76
Query: 340 GVTVVNSPKQKDELI 384
V S QK+EL+
Sbjct: 77 SVAFYASQAQKNELM 91
>UniRef50_A5LSZ6 Cluster: 50S ribosomal protein L6; n=1;
Streptococcus pneumoniae SP9-BS68|Rep: 50S ribosomal
protein L6 - Streptococcus pneumoniae SP9-BS68
Length = 139
Score = 34.3 bits (75), Expect = 1.9
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Frame = +2
Query: 26 LVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVT 205
+VTVKGP+G L R F ++IR V + + + SK+ T + + NM+ GV+
Sbjct: 23 VVTVKGPKGELTREFSK-DIEIR-VEGTEITLHRPNDSKEMKTIHGTTRALLNNMVVGVS 80
Query: 206 KGF--QYKMRAV 235
+GF + +MR V
Sbjct: 81 EGFKKELEMRGV 92
>UniRef50_Q4QI55 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 946
Score = 34.3 bits (75), Expect = 1.9
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = -2
Query: 195 LIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTA--KCLKFLLRTPRGPLTVTRR 22
L +F+ C ++V+ A+S L P+H + R GF + TA + FL R PL + R
Sbjct: 22 LELFAACRESVVHVAASHLLPDHVAVTTRNGFVELIDTATGEFRLFLTYLDRIPLDASLR 81
Query: 21 DFT 13
F+
Sbjct: 82 CFS 84
>UniRef50_Q8WTL7 Cluster: Putative uncharacterized protein; n=1;
Caenorhabditis elegans|Rep: Putative uncharacterized
protein - Caenorhabditis elegans
Length = 2460
Score = 33.9 bits (74), Expect = 2.5
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Frame = +2
Query: 74 HLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVC---SHVENMIKGVT--KGFQYKMRAVY 238
H+ D++++ + ++ WF ++L ++RT C S ++ I +T KGF + M+A +
Sbjct: 361 HVKHDVKIILTKETCMDIWFMRGEQLESIRTRCGPLSSLDMSILWITTEKGFYWNMKAEF 420
Query: 239 AHFPITVS 262
+F T S
Sbjct: 421 LNFEATTS 428
>UniRef50_Q8XPL8 Cluster: Putative surface-exposed adhesin protein;
n=1; Ralstonia solanacearum|Rep: Putative
surface-exposed adhesin protein - Ralstonia solanacearum
(Pseudomonas solanacearum)
Length = 1309
Score = 33.5 bits (73), Expect = 3.3
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +1
Query: 394 NSLEDVSSSAALIQQSTTVKNKDIRKFLDG 483
NS++ +SSSA+L+QQS K+ + K LDG
Sbjct: 150 NSIKSISSSASLVQQSAAGKDITVAKDLDG 179
>UniRef50_Q847P4 Cluster: 50S ribosomal protein L6; n=1; Aster
yellows phytoplasma|Rep: 50S ribosomal protein L6 -
Aster yellows phytoplasma
Length = 175
Score = 33.5 bits (73), Expect = 3.3
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Frame = +2
Query: 8 VHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-NPRLLKVEKWFGSKKELAAVRTVCSHVE 184
V + ++ +KGP G L + + DI ++ N + V++ KK A +
Sbjct: 25 VKKQDNIIYIKGPLGKLNQE---IIGDINIIINHNNIIVKRKHNDKKNRALHGLYRMLIY 81
Query: 185 NMIKGVTKGFQYKMRAVYAHFPITVS 262
NMIKGV+ GF+ K+ + F ++
Sbjct: 82 NMIKGVSNGFKKKLELIGVGFRANIN 107
>UniRef50_Q0ID19 Cluster: 50S ribosomal protein L6; n=6;
Bacteria|Rep: 50S ribosomal protein L6 - Synechococcus
sp. (strain CC9311)
Length = 179
Score = 33.5 bits (73), Expect = 3.3
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +2
Query: 2 LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVC-SH 178
+ V + VTVKGP+G LKR V + V+ ++ +K+ +C +
Sbjct: 15 VNVTLSGLAVTVKGPKGELKRTLPS-GVSVNQVDNSIVVAPT--STKRSSRERHGLCRTL 71
Query: 179 VENMIKGVTKGFQYKMRAV 235
V NM+ GV++G+ K+ V
Sbjct: 72 VANMVIGVSQGYSKKLEIV 90
>UniRef50_Q8A491 Cluster: 50S ribosomal protein L6; n=34;
Bacteria|Rep: 50S ribosomal protein L6 - Bacteroides
thetaiotaomicron
Length = 189
Score = 33.5 bits (73), Expect = 3.3
Identities = 23/82 (28%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Frame = +2
Query: 2 LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVE---KWFGSKKELAAVRTVC 172
+TV +K +VTVKGP+G L + + + A+++ + + + E + + K+ A +
Sbjct: 15 VTVTLKDDVVTVKGPKGELSQ-YVNPAINVAIEDGHVTLTENEKEMIDNPKQKHAFHGLY 73
Query: 173 -SHVENMIKGVTKGFQYKMRAV 235
S V NM+ GV++G++ ++ V
Sbjct: 74 RSLVHNMVVGVSEGYKKELELV 95
>UniRef50_O23049 Cluster: 50S ribosomal protein L6, chloroplast
precursor; n=8; Magnoliophyta|Rep: 50S ribosomal protein
L6, chloroplast precursor - Arabidopsis thaliana
(Mouse-ear cress)
Length = 223
Score = 33.5 bits (73), Expect = 3.3
Identities = 22/86 (25%), Positives = 43/86 (50%)
Frame = +2
Query: 2 LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHV 181
+T+ ++ + + VKGP G L + V++ L+V+K +++ +
Sbjct: 57 VTIALEGQDLKVKGPLGELALTYPR-EVELTKEESGFLRVKKTVETRRANQMHGLFRTLT 115
Query: 182 ENMIKGVTKGFQYKMRAVYAHFPITV 259
+NM+ GV+KGF+ K+ V + TV
Sbjct: 116 DNMVVGVSKGFEKKLILVGVGYRATV 141
>UniRef50_Q90Y13 Cluster: STAT6; n=7; Clupeocephala|Rep: STAT6 -
Tetraodon fluviatilis (Puffer fish)
Length = 794
Score = 33.1 bits (72), Expect = 4.4
Identities = 17/80 (21%), Positives = 39/80 (48%)
Frame = +1
Query: 217 IQDACCVCSLPHYCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGN 396
IQ + V P + T+ +R LGEK + ++N + +++ I G+
Sbjct: 298 IQSSLVVEKQPPQVIKTQSKFSTTVRYLLGEKIAPGKPVVLKAQIINESQARNQGSIPGD 357
Query: 397 SLEDVSSSAALIQQSTTVKN 456
++ ++ ++ A+++ +T KN
Sbjct: 358 TVGELLNNTAILEHNTASKN 377
>UniRef50_Q6YR07 Cluster: 50S ribosomal protein L6; n=16;
Firmicutes|Rep: 50S ribosomal protein L6 - Onion yellows
phytoplasma
Length = 184
Score = 33.1 bits (72), Expect = 4.4
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +2
Query: 8 VHVKSR-LVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVR-TVCSHV 181
V +K R ++V+GP+G L+ F H + + N + K + + + T + +
Sbjct: 17 VDIKDRNFISVEGPKGKLEYQFNHR---LTITNENKVITVKRPNDEIFMKKIHGTTRALL 73
Query: 182 ENMIKGVTKGFQYKMRAV 235
NM++GV+KGFQ ++ V
Sbjct: 74 SNMVEGVSKGFQKTLKIV 91
>UniRef50_Q9PAD6 Cluster: ABC transporter ATP-binding protein; n=5;
Xylella fastidiosa|Rep: ABC transporter ATP-binding
protein - Xylella fastidiosa
Length = 564
Score = 32.7 bits (71), Expect = 5.8
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Frame = -3
Query: 422 AELETSSKELPSMISSSFCFGELTTVTPGAIFTLLMYF--SPKKLRISIIELPSVVTQ-* 252
+ L T S+ L S+I S+ +TVT AI +L+M F SP+ +S++ +P V+
Sbjct: 105 SRLATDSELLRSIIGSTMSVATRSTVT--AIGSLIMLFITSPRLASLSLVVIPLVILPIV 162
Query: 251 WGSEHTQHAS 222
G++H Q A+
Sbjct: 163 LGAQHLQKAA 172
>UniRef50_Q4UCX9 Cluster: Glutamate-cysteine ligase, putative; n=1;
Theileria annulata|Rep: Glutamate-cysteine ligase,
putative - Theileria annulata
Length = 795
Score = 32.7 bits (71), Expect = 5.8
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 346 TVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRK 471
TVV P + ++ G+S+ED + + +++TT KDI K
Sbjct: 76 TVVTGPTTTNSTVVPGSSMEDSTVPNTVTEENTTTTTKDIIK 117
>UniRef50_Q966K1 Cluster: Putative uncharacterized protein; n=1;
Caenorhabditis elegans|Rep: Putative uncharacterized
protein - Caenorhabditis elegans
Length = 113
Score = 32.3 bits (70), Expect = 7.6
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = -2
Query: 522 CHLAHS-CFLRYIKTIQELSDILILDCSRLLNESSRARDIFQR 397
C+L ++ C LR IK + L+ +L + SRL N SR RD+F++
Sbjct: 21 CYLPNNNCKLRQIKPVPNLTRLL--EESRLTNSLSRLRDVFKK 61
>UniRef50_A7TES6 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 206
Score = 32.3 bits (70), Expect = 7.6
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +1
Query: 328 KMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTT 507
K A G +V + ++KDE++I+G+ LE+V + + +KN + + +D +K T
Sbjct: 134 KFATGCSVSKNAEKKDEIVIQGDVLEEVEKYIHSLLEEKGLKNVKL-EIIDSQKKKKKPT 192
>UniRef50_Q9ZCS0 Cluster: 50S ribosomal protein L6; n=10;
Rickettsieae|Rep: 50S ribosomal protein L6 - Rickettsia
prowazekii
Length = 177
Score = 32.3 bits (70), Expect = 7.6
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +2
Query: 29 VTVKGPRGVLKRNFK-HLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVT 205
V + GP+G L + FK ++A+ ++ L V+ +K A T S + NMI GV
Sbjct: 24 VKISGPKGELSKTFKGNIAI---IMEENKLVVKPLAVNKNARAMWGTARSIICNMITGVK 80
Query: 206 KGFQYKM 226
+GF+ K+
Sbjct: 81 EGFKLKL 87
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 555,281,322
Number of Sequences: 1657284
Number of extensions: 10796948
Number of successful extensions: 26645
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 25877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26601
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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