Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00047
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 105 4e-24
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 104 7e-24
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch... 27 1.8
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 1.8
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ... 27 1.8
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 2.4
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 3.2
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 4.2
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 5.6
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 5.6
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 7.3
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 9.7
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 105 bits (252), Expect = 4e-24
Identities = 51/82 (62%), Positives = 63/82 (76%)
Frame = +1
Query: 265 TEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQST 444
TE +++EIRNFLGE+ R +K PGVTV S KDE+IIEGNSLE+VS SAA I+Q
Sbjct: 104 TENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQIC 163
Query: 445 TVKNKDIRKFLDGLYVSEKTTV 510
V+NKDIRKFLDG+YVSE+ +
Sbjct: 164 NVRNKDIRKFLDGIYVSERGNI 185
Score = 96.7 bits (230), Expect = 2e-21
Identities = 44/87 (50%), Positives = 63/87 (72%)
Frame = +2
Query: 2 LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHV 181
++V +K+RLVTVKGPRGVLK+N + + ++++ +K W GS+K A +RT S +
Sbjct: 17 VSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQG-NTIKFIVWHGSRKHNACIRTAYSII 75
Query: 182 ENMIKGVTKGFQYKMRAVYAHFPITVS 262
NMI GVT+GF+YKMR VYAHFPI ++
Sbjct: 76 NNMIIGVTQGFRYKMRLVYAHFPININ 102
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 104 bits (250), Expect = 7e-24
Identities = 50/82 (60%), Positives = 63/82 (76%)
Frame = +1
Query: 265 TEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQST 444
TE +++EIRNFLGE+ R +K PGVTV S KDE+I+EGNSLE+VS SAA I+Q
Sbjct: 104 TENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQIC 163
Query: 445 TVKNKDIRKFLDGLYVSEKTTV 510
V+NKDIRKFLDG+YVSE+ +
Sbjct: 164 NVRNKDIRKFLDGIYVSERGNI 185
Score = 94.3 bits (224), Expect = 1e-20
Identities = 43/87 (49%), Positives = 62/87 (71%)
Frame = +2
Query: 2 LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHV 181
+TV +K+R VTV GPRG LK+N +H+ ++++ +K W GS+K A +R+V S +
Sbjct: 17 VTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGSRKHNACIRSVYSII 75
Query: 182 ENMIKGVTKGFQYKMRAVYAHFPITVS 262
NMI GVT+GF+YKMR VYAHFPI ++
Sbjct: 76 NNMIIGVTQGFRYKMRLVYAHFPININ 102
>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 872
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 540 LFNVFICHLAHSCFLRYIKTIQELSDILILD 448
L+ FI L S L Y KT++E++ + I+D
Sbjct: 787 LYYEFIHSLHQSSLLPYFKTLKEIAHLFIID 817
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +1
Query: 355 NSPKQKDELIIEGNSLEDVSSSAALIQQS 441
+SPK+K +L ++G L+ + + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277
>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/36 (27%), Positives = 24/36 (66%)
Frame = +1
Query: 400 LEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTT 507
+ D+S+SA + T + N+++ K +GL+++ +T+
Sbjct: 78 MSDISNSACRASKITALNNRELYKDDNGLFITVQTS 113
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 68 FKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVT 205
F H +VD+ + L + E WF + T+CS + N++ VT
Sbjct: 1594 FTHGSVDMLIEQNNLKQSEIWFVLNDFSLVLATICSCLGNLLNLVT 1639
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = -1
Query: 169 DCPHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGPFNCHQT 23
D P+G GS F+ V+H+N N+ ++ +N N H +
Sbjct: 386 DFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHS 434
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/63 (22%), Positives = 35/63 (55%)
Frame = +2
Query: 20 SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKG 199
S+L + + ++ RN + L++ ++VN +E W G + +AV T + ++++ +
Sbjct: 1111 SKLCNLLNDKNIVVRN-QSLSLFHQLVNKYPFLLESWIGLQLVQSAVNTNTADIDDLYRL 1169
Query: 200 VTK 208
++K
Sbjct: 1170 LSK 1172
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 163 PHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGP 41
PH GK S +N E+R A+V+S + PF GP
Sbjct: 127 PHAGKAA-QSAHVMNSTESRPSSAHVSSSYTQKPFAFPLGP 166
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 5.6
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 153 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 43
A SFL+P STF R F+ +S C + LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -2
Query: 519 HLAHSCFLRYIKTIQELSDILILDCSRLLNESSRARDIFQRVAF 388
H C IKTI + +L+LD + + S QR AF
Sbjct: 1373 HATVLCIAHRIKTIVDYDKVLVLDSGKTVEFGSPKSLYTQRRAF 1416
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +1
Query: 346 TVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKN 456
+V+N K EL +EG L+ V ++ ++ T+ +
Sbjct: 1228 SVINQESGKIELFMEGTGLQAVMNTEGIVGTKTSTNH 1264
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,344,311
Number of Sequences: 5004
Number of extensions: 47605
Number of successful extensions: 137
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -