Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00047
         (550 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)        118   3e-27
SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   1e-08
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)               33   0.15 
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)                 31   0.82 
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_49554| Best HMM Match : DNA_gyraseA_C (HMM E-Value=7)               28   5.8  
SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)                   28   5.8  
SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score =  118 bits (284), Expect = 3e-27
 Identities = 51/85 (60%), Positives = 68/85 (80%)
 Frame = +2

Query: 8   VHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVEN 187
           V VKSR+VTV GPRG LKRNF+HL +++  V    ++V+ WF S+KELA V+T+ +H+EN
Sbjct: 574 VKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKDKVRVDVWFASRKELACVKTIITHIEN 633

Query: 188 MIKGVTKGFQYKMRAVYAHFPITVS 262
           MIKGV  G++YKMRAVYAHFPI ++
Sbjct: 634 MIKGVIYGYRYKMRAVYAHFPINIA 658



 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 15/24 (62%), Positives = 21/24 (87%)
 Frame = +1

Query: 268 EGNSIIEIRNFLGEKYIRRVKMAP 339
           E  +++E+RNFLGEKY+RRV+M P
Sbjct: 661 ENGTLVEVRNFLGEKYVRRVRMRP 684


>SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 26/29 (89%), Positives = 28/29 (96%)
 Frame = +1

Query: 424 ALIQQSTTVKNKDIRKFLDGLYVSEKTTV 510
           ALIQQST VKNKDIRKFLDG+YVSEKTT+
Sbjct: 2   ALIQQSTKVKNKDIRKFLDGVYVSEKTTI 30


>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
          Length = 762

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +1

Query: 271 GNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQ--KDELIIEGNSLEDVSSSAALIQQST 444
           G  ++ +++ LG++    +      T +       K+EL    +SLE+VS   A +Q S 
Sbjct: 196 GREVVRLKDELGKQASNELSFIAKTTELEDQLVLLKEELNSRVSSLENVSKQLAELQSSA 255

Query: 445 TVKNKDIRKFLDGLYVSEK 501
             K+++I      L V+EK
Sbjct: 256 LTKDEEISSLTKRLQVTEK 274


>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
          Length = 1152

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +1

Query: 310 KYIRRVKMAPGVTVVNSPKQKDELIIE-GNSLEDVSSSAALIQQSTTVKNKDIRKFLDGL 486
           K   R ++A G+   ++P Q + LI   G   EDV S+ +L +  +      + KF DG 
Sbjct: 25  KRFERFRIASGLDKKDAPSQINALIYTMGERAEDVLSTFSLTEAESKDYKVVVEKF-DGH 83

Query: 487 YVSEKTTV 510
           +V ++ T+
Sbjct: 84  FVKKRNTI 91



 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 14   VKSRLVTVKGPRGVLKRNFKHL 79
            V++R  TV  PRG L+RN +HL
Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 140  KKELAAVRTVCSHVENMIKGVTKGFQY-KMRAVYAHFPITVSPLRVIQLLRYVT 298
            K+ LAA + V +   N+ KGVT+G    K R V    PIT  P RV+   + VT
Sbjct: 948  KRALAAAKVVKTERVNVAKGVTQGMPVTKGRVVTQGMPIT--PGRVVTQGKVVT 999


>SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 118 LQETRVYHANVNSQVFEVPFENSAGPFNCHQ 26
           L  TR+ +  V+S   EV  E S  P++CHQ
Sbjct: 160 LYNTRIPNVTVSSDGGEVELEISDDPYDCHQ 190


>SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -2

Query: 171 QTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVT 28
           QT++T A  F D       RRR F+  +S   C + L R+P  P++ T
Sbjct: 85  QTMITTA--FPDTRKSPLTRRRNFSDGVSDLSCTENLARSPCAPVSPT 130


>SB_49554| Best HMM Match : DNA_gyraseA_C (HMM E-Value=7)
          Length = 535

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/63 (23%), Positives = 28/63 (44%)
 Frame = +1

Query: 316 IRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVS 495
           I+      GV V++  K   E + + +  E    +  L Q  T + N+ +RK     ++ 
Sbjct: 276 IKEADKGSGVVVMDKDKYNQEALRQLSDKEVYKETKDLTQYITELVNRRVRKLSSDGFID 335

Query: 496 EKT 504
           +KT
Sbjct: 336 DKT 338


>SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)
          Length = 309

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 395 LPSMISSSFCFGELTTVTPGAIFTLLMYFSPKKLRISIIE 276
           +P  I S    G+L  +T G I T      PKKL   +IE
Sbjct: 218 IPIAIGSKVNLGQLNILTAGPIITANTSGDPKKLANQVIE 257


>SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -3

Query: 425 AAELETSSKELPSMISSSFCFGELTTVTPGAIFTLLMYFSPKKLRISIIEL 273
           AAE++TS   L  + S S C      VT   IFT  MY  P+++ ++   L
Sbjct: 234 AAEVKTSRIFLLVINSFSICLAPFMIVTFIEIFTGTMYTVPRQVYLATTNL 284


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,533,958
Number of Sequences: 59808
Number of extensions: 353961
Number of successful extensions: 900
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)