Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00047
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim...   104   4e-23
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil...   104   4e-23
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos...   102   2e-22
At1g33480.1 68414.m04144 zinc finger (C3HC4-type RING finger) fa...    37   0.010
At1g05190.1 68414.m00523 ribosomal protein L6 family protein Sim...    33   0.095
At5g14210.1 68418.m01660 leucine-rich repeat transmembrane prote...    30   1.2  
At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identi...    28   4.7  
At2g19500.1 68415.m02279 FAD-binding domain-containing protein /...    28   4.7  
At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase fa...    27   6.2  
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont...    27   8.3  

>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
           similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
           [Arabidopsis thaliana]
          Length = 194

 Score =  104 bits (249), Expect = 4e-23
 Identities = 45/92 (48%), Positives = 68/92 (73%), Gaps = 5/92 (5%)
 Frame = +2

Query: 2   LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGSKKELAAVRT 166
           +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK++ WFG++K  A++RT
Sbjct: 16  VTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGTRKTSASIRT 75

Query: 167 VCSHVENMIKGVTKGFQYKMRAVYAHFPITVS 262
             SHV+N+I GVT+GF+YKMR VYAHFPI  S
Sbjct: 76  ALSHVDNLISGVTRGFRYKMRFVYAHFPINAS 107



 Score =  103 bits (246), Expect = 1e-22
 Identities = 50/81 (61%), Positives = 63/81 (77%)
 Frame = +1

Query: 268 EGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTT 447
           +G SI EIRNFLGEK +R+V+M  GVT+V S K KDE++++GN +E VS S ALI Q   
Sbjct: 111 DGKSI-EIRNFLGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCH 169

Query: 448 VKNKDIRKFLDGLYVSEKTTV 510
           VK KDIRKFLDG+YVSEK+ +
Sbjct: 170 VKKKDIRKFLDGIYVSEKSKI 190


>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
           to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
           thaliana]
          Length = 194

 Score =  104 bits (249), Expect = 4e-23
 Identities = 45/92 (48%), Positives = 68/92 (73%), Gaps = 5/92 (5%)
 Frame = +2

Query: 2   LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGSKKELAAVRT 166
           +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK++ WFG++K  A++RT
Sbjct: 16  VTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGTRKTSASIRT 75

Query: 167 VCSHVENMIKGVTKGFQYKMRAVYAHFPITVS 262
             SHV+N+I GVT+GF+YKMR VYAHFPI  S
Sbjct: 76  ALSHVDNLISGVTRGFRYKMRFVYAHFPINAS 107



 Score =  103 bits (246), Expect = 1e-22
 Identities = 50/81 (61%), Positives = 63/81 (77%)
 Frame = +1

Query: 268 EGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTT 447
           +G SI EIRNFLGEK +R+V+M  GVT+V S K KDE++++GN +E VS S ALI Q   
Sbjct: 111 DGKSI-EIRNFLGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCH 169

Query: 448 VKNKDIRKFLDGLYVSEKTTV 510
           VK KDIRKFLDG+YVSEK+ +
Sbjct: 170 VKKKDIRKFLDGIYVSEKSKI 190


>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
           ribosomal protein L9, cytosolic - garden pea,
           PIR2:S19978
          Length = 194

 Score =  102 bits (244), Expect = 2e-22
 Identities = 45/92 (48%), Positives = 66/92 (71%), Gaps = 5/92 (5%)
 Frame = +2

Query: 2   LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGSKKELAAVRT 166
           + + V ++++ V+GPRG L R+FKHL +D +++       R LK++ WFGS+K  A++RT
Sbjct: 16  VAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKIDSWFGSRKTSASIRT 75

Query: 167 VCSHVENMIKGVTKGFQYKMRAVYAHFPITVS 262
             SHV+N+I GVT+GF Y+MR VYAHFPI  S
Sbjct: 76  ALSHVDNLIAGVTQGFLYRMRFVYAHFPINAS 107



 Score =  102 bits (244), Expect = 2e-22
 Identities = 50/76 (65%), Positives = 58/76 (76%)
 Frame = +1

Query: 274 NSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVK 453
           N  IEIRNFLGEK +R+V+M  GV +V S K KDE+I+EGN +E VS S ALI Q   VK
Sbjct: 112 NKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVK 171

Query: 454 NKDIRKFLDGLYVSEK 501
            KDIRKFLDG+YVSEK
Sbjct: 172 KKDIRKFLDGIYVSEK 187


>At1g33480.1 68414.m04144 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 508

 Score = 36.7 bits (81), Expect = 0.010
 Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
 Frame = +1

Query: 52  SSQKELQTLGC*HSHGKPSSPEG*EMVRIQKG---ACRREDSLFTCREHD*RSN*RLPIQ 222
           SSQ E Q +   +  G  S PE   +  I  G    C ++   F   E D R+N  +   
Sbjct: 197 SSQPESQPVV--NHRGVSSQPESQPVNHINDGHEQQCDQDVEGFKEMEEDERNN--IGTS 252

Query: 223 DACCVCSLPHYCVTTEGNSIIEIRNFLGE 309
            ACC C   HYC  +  N I+   N  G+
Sbjct: 253 SACCSCRTVHYCCVSRDNQIMYAYNNAGD 281


>At1g05190.1 68414.m00523 ribosomal protein L6 family protein
           Similar to Mycobacterium RlpF (gb|Z84395). ESTs
           gb|T75785,gb|R30580,gb|T04698 come from this gene
          Length = 223

 Score = 33.5 bits (73), Expect = 0.095
 Identities = 22/86 (25%), Positives = 43/86 (50%)
 Frame = +2

Query: 2   LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHV 181
           +T+ ++ + + VKGP G L   +    V++       L+V+K   +++         +  
Sbjct: 57  VTIALEGQDLKVKGPLGELALTYPR-EVELTKEESGFLRVKKTVETRRANQMHGLFRTLT 115

Query: 182 ENMIKGVTKGFQYKMRAVYAHFPITV 259
           +NM+ GV+KGF+ K+  V   +  TV
Sbjct: 116 DNMVVGVSKGFEKKLILVGVGYRATV 141


>At5g14210.1 68418.m01660 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 812

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 223 DACCVCSLPHYCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVN 357
           D C + +  H  +T +GNSI E++  +G+K  +   M  G ++ N
Sbjct: 54  DLCQIPATAHMSITCQGNSITELK-VMGDKLFKPFGMFDGSSLPN 97


>At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identical
           to CLC-d chloride channel protein [Arabidopsis thaliana]
           GI:1742959
          Length = 792

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = +1

Query: 247 PHYCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAA 426
           P   V  E  S+ ++ N   +  +R + + P  + V     + +L+IE N      SSA 
Sbjct: 706 PSPYVVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVIGLITRKDLLIEENG----ESSAV 761

Query: 427 LIQQSTTVKNK 459
            +QQST+V+ +
Sbjct: 762 ELQQSTSVRGR 772


>At2g19500.1 68415.m02279 FAD-binding domain-containing protein /
           cytokinin oxidase family protein similar to cytokinin
           oxidase, Zea mays [SP|Q9T0N8] [gi:3441978]
          Length = 501

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -3

Query: 392 PSMISS-SFCFGELTTVTPGAI 330
           PS+IS+ S  FG +TTVTPG +
Sbjct: 39  PSIISAASHDFGNITTVTPGGV 60


>At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from {Mus
           musculus} SP|P70704, {Bos taurus} SP|Q29449; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1107

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
 Frame = +1

Query: 304 GEKYIRRVKMAPGVTVVNSPKQKDELI-IEGNSLEDVSSS---AALIQQSTTVKNKDIRK 471
           G+K    +++A     + SP+ K +L+ I+G + EDVS S     L  + T  + KD+  
Sbjct: 637 GDKQNTAIQIALSCNFI-SPEPKGQLLMIDGKTEEDVSRSLERVLLTMRITASEPKDVAF 695

Query: 472 FLDG 483
            +DG
Sbjct: 696 VIDG 699


>At3g19320.1 68416.m02450 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560;
          Length = 493

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 157 GGKLLFGSEPFLN-LQETRVYHANVNSQVFEVP 62
           GGK L   + FLN L+E  ++HAN N+ V  VP
Sbjct: 187 GGKKL-RLDNFLNKLEEVTIFHANSNNFVGSVP 218


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,144,023
Number of Sequences: 28952
Number of extensions: 243959
Number of successful extensions: 608
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)