Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00046
(510 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1110 + 11756814-11757485,11757566-11757644,11757705-117579... 30 1.2
05_01_0580 + 5210002-5210170,5210466-5210524,5210883-5211668,521... 29 1.6
03_05_1124 + 30559633-30559674,30559781-30559890,30559973-305600... 29 1.6
09_02_0626 + 11352690-11353078,11353106-11354006 29 2.2
06_03_0640 - 23059473-23060489,23060592-23060651,23063163-230632... 29 2.9
09_03_0171 - 13062794-13064017 28 3.8
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 28 3.8
03_05_0459 + 24533233-24533278,24533881-24534167,24534287-245345... 28 5.0
02_02_0707 + 13144147-13144788,13145115-13148663 28 5.0
02_04_0058 - 19329380-19330498,19330941-19330988,19331797-19332174 27 6.6
>12_01_1110 +
11756814-11757485,11757566-11757644,11757705-11757991,
11758072-11758131,11758311-11758976
Length = 587
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +3
Query: 42 NIIQREKEGQSTIPDLLSNITNIQKLITKTEQKIKNSNRHLNDVTAKINLGNVTLDGIRK 221
+I R KE Q IPD L+N+ + + + + K+K + L D + ++ T+ R+
Sbjct: 423 SIRARFKEIQPLIPDDLANVITLAAYLEQHQFKLKKGKQRLVDRRERKDI-ETTIQANRQ 481
Query: 222 ETDKLKSK 245
++KSK
Sbjct: 482 LVHEVKSK 489
>05_01_0580 +
5210002-5210170,5210466-5210524,5210883-5211668,
5211898-5212737
Length = 617
Score = 29.5 bits (63), Expect = 1.6
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 9/68 (13%)
Frame = +2
Query: 251 RLGNNATKLQEANLEGALNLTR------EAKHRAVKALNDANHL--QND-IAKTDRQLKN 403
R+ N+ + + A+L L LTR + VKAL +A+HL +ND +AK QLK
Sbjct: 305 RVVNSRLQQENAHLARRLELTRLPPVPKPINNMEVKALQEADHLRQENDKLAKEVEQLK- 363
Query: 404 TDRLIEMQ 427
TDR +++
Sbjct: 364 TDRFSDVE 371
>03_05_1124 + 30559633-30559674,30559781-30559890,30559973-30560030,
30560455-30560718,30560803-30560940,30561264-30561315,
30561525-30561604,30561929-30561988,30562084-30562164,
30562299-30562376,30563548-30563676,30563896-30564039,
30564145-30564290,30564402-30564558,30564657-30564715,
30564800-30564959,30565054-30565203,30565309-30565445,
30565531-30565677,30565995-30566052,30566417-30566518,
30566590-30566627,30566846-30566972,30567053-30567223,
30567313-30567444,30567575-30567681,30567815-30567875,
30567970-30568147,30568245-30568450,30568781-30568879,
30569021-30569236,30569333-30569472,30569559-30569660,
30569747-30569861,30570129-30570194,30570323-30570480,
30570594-30570690,30570931-30571137,30571435-30571505,
30571648-30571747,30571836-30571892,30571969-30572025,
30572108-30572188,30572319-30572401,30572504-30572651
Length = 1722
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +2
Query: 410 RLIEMQYGNFNTTQNV--NDKKLTQMQEQVDRLET 508
RL+E+Q + ++ + D KL Q+QE ++RLET
Sbjct: 1245 RLLEVQKESDELSREILEKDSKLNQLQEMIERLET 1279
>09_02_0626 + 11352690-11353078,11353106-11354006
Length = 429
Score = 29.1 bits (62), Expect = 2.2
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Frame = +2
Query: 236 KIESYRLGNNATKLQEANLEGALNLTR----EAKHRAVKALNDANH--LQNDIAKTDRQL 397
K E G A L+ A E A R EA+ + + A L ++AK L
Sbjct: 204 KCEEAVAGREARHLESARAERAAIAARASELEAREKDLAAGGPPGGAGLAGELAKAQSTL 263
Query: 398 KNTDRLIEMQYGNFNTTQNVNDKKLTQMQEQVDRLE 505
+ +RL++ Q G + N+ Q+ + V RLE
Sbjct: 264 ADLERLVQDQAGGIAALRLTNELGPRQLSDAVARLE 299
>06_03_0640 -
23059473-23060489,23060592-23060651,23063163-23063283,
23063476-23065496
Length = 1072
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/80 (23%), Positives = 37/80 (46%)
Frame = +3
Query: 45 IIQREKEGQSTIPDLLSNITNIQKLITKTEQKIKNSNRHLNDVTAKINLGNVTLDGIRKE 224
++ + + TI LS++TN+ + E+ N RH D+ ++ L ++
Sbjct: 647 LLTHDSVWEGTIQLSLSSLTNVVAIFKSGEKTSTNEWRHFLDIKGRVRLS--AFQEFLEQ 704
Query: 225 TDKLKSKAID*ETTPLNYKK 284
K +S+AI T L +K+
Sbjct: 705 LPKSRSRAI--MVTELRWKE 722
>09_03_0171 - 13062794-13064017
Length = 407
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 99 YWIINQGWLIVLLFLFG*CFLWS 31
YWI QGWL+++ FLWS
Sbjct: 138 YWITAQGWLLMVHLELYEIFLWS 160
>03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 329 RAVKALNDANH-LQNDIAKTDRQLKNTDRLIEMQYGNFNTTQNV 457
R + LND L+ IAK +KN D EM + T +N+
Sbjct: 2053 RVINFLNDVREDLRQSIAKDSITIKNEDLTAEMHHKEDRTDENI 2096
>03_05_0459 +
24533233-24533278,24533881-24534167,24534287-24534568,
24534628-24534682,24534895-24534935,24537484-24537549
Length = 258
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = +2
Query: 11 RNDDKVNDHRKHYPKRKRRTINHP*FIIQYNKHTKTYHKNRTKNKKQQQASK*CDSQNKS 190
++ DKV H++H K K + + KH K HK+R+K+K++++ + + K
Sbjct: 126 KSKDKVKKHKRHKEKDKDKYKDQ-------KKH-KHRHKDRSKDKEKEKEKEKEKEKKKD 177
Query: 191 RKRH 202
+ H
Sbjct: 178 KSAH 181
>02_02_0707 + 13144147-13144788,13145115-13148663
Length = 1396
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +3
Query: 12 EMTTKLMTIENIIQREKEGQSTIPDLLSNITNIQK---LITKTEQKIKNS 152
+M KLM ++ +R ++ Q IP+LL NI + K +++KT +NS
Sbjct: 1299 DMIEKLMKVKVRGRRTEKLQEVIPELLKNILLVLKANRVLSKTSTSEENS 1348
>02_04_0058 - 19329380-19330498,19330941-19330988,19331797-19332174
Length = 514
Score = 27.5 bits (58), Expect = 6.6
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +3
Query: 9 DEMTTKLMTIENIIQREKEGQSTIPDLLSNITNIQKLITKTEQKIKNSNRHLNDVTAKIN 188
++M+T +E+ R+K+ S + LL N T +++L +QK +S R +
Sbjct: 223 EQMSTLNQRLESAEDRQKQMVSFLAKLLQNPTFLRQLKMHRQQKEIDSTRVKRKFLKHVP 282
Query: 189 LGNV 200
GN+
Sbjct: 283 HGNI 286
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,261,989
Number of Sequences: 37544
Number of extensions: 155264
Number of successful extensions: 598
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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